Eucyclogobius newberryi (tidewater goby): 140358342
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Entry
140358342 CDS
T10929
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140358342 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eny03019
]
140358342 (xab2)
03041 Spliceosome [BR:
eny03041
]
140358342 (xab2)
Messenger RNA biogenesis [BR:
eny03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
140358342 (xab2)
Spliceosome [BR:
eny03041
]
Complex B
Other components
Prp19-related factors
140358342 (xab2)
Complex C
140358342 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
TPR_12
Suf
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_16
Motif
Other DBs
NCBI-GeneID:
140358342
NCBI-ProteinID:
XP_072299222
LinkDB
All DBs
Position
Unknown
AA seq
848 aa
AA seq
DB search
MLSFSGKPDVMFEDDDLPYEEEIIRNPYSVKCWIRYIEFKQNGPKKNMIYERALKELPGS
YKLWYNYLKERRKQVKGKCLTEPVYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCKIT
RSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEDYIDYL
RSVGRLDEAALRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIRGG
LTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEESILTVVTVRDFTQVFDSYAQFEENMI
AAKMETTVEMGKDEDDDVDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVKLC
DGNPRQIINTYTEAVQTVDPIKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVNYK
QVDDLAAVWCEFGEMELRHENYEQALRLLRKATAIPSKKAEYFDSSEPVQNRVFKSLKVW
SMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGIAL
FKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEEYG
LARHAMAVYERATEAVEINERHDMFNIYIKRAAEIYGVTYTRAIYQKSIEVLPDEHARDM
CLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQMWKEFEIRHGNEDTVREMLRIK
RSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQLGIDDMKMLEQKAQQLAAEAERDK
PKPKEKILFVRSDTSRSELAELSKQINPDEIDIDDDDDENQGPDEVQLEQKSVPTAVFGG
LKDDQDAQ
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgctttcgttcagtggaaaacctgacgtcatgtttgaagatgatgatctaccttacgaa
gaggaaatcatcaggaatccatactctgtaaaatgctggatacgttatatcgaattcaag
caaaatggacccaaaaaaaacatgatttatgaacgtgctctgaaagagctcccgggcagt
tacaagctgtggtacaactatctaaaggagagacgtaaacaggtaaaagggaaatgctta
actgagcctgtctatgaggaaatcaacaactgtcatgaaagagcacttgttttcatgcac
aagatgccaagaatttggcttgactactgccagtttcttgtttcccaatgtaaaatcaca
agaagtcgaaggacatttgatcgtgccttaagagccctgccggttacacagcacccacga
atctggcctctgtatctgcgatttgtccgtaatctacccctcccagaaactgcaattcga
gtttatcgtagataccttaagctttctccagagaatgcagaggactacatagattatttg
cgctctgttggtcgcttggatgaagctgctttgcgacttgctgctattgtcaatgatgaa
agctttgtatccaaggagggcaaatcaaactaccaactgtggcatgaactttgtgacctg
atctctcagaatcctgataaagttacatctctgaatgtcggagctataatccgaggagga
cttacgcgtttcactgaccaacttggaaaactttggtgctccttagcagattattacatt
aggagtgggcactttgaaaaggctcgtgatgtatacgaagagtccattcttacagtagta
acagttagagatttcacacaagtatttgacagttatgctcagtttgaagagaacatgatt
gctgccaagatggaaaccactgttgaaatgggcaaggatgaagatgatgacgttgattta
gagcttagattagctcgttttgagcagcttattgctcgacgccctcttcttctaaacagc
gttttacttcggcaaaaccctcacaacgttcatgagtggcacaaacgagtcaagctatgt
gatggcaatcctcggcagattattaacacctatactgaggctgtacagacggttgaccca
ataaaagccactggaaagcctcactcactttgggtttcctttgcgaagttctatgaagaa
aatgagcaactggatgatgcccggacaatatttgaaaaggcgactaaagtaaactacaag
caagtggatgacctggcagcagtttggtgtgaatttggagaaatggaactgcgtcatgaa
aattacgaacaggctctgcgcctactgaggaaagcaactgcaatcccatccaagaaggca
gaatactttgattcctctgagccggtccaaaacagagtctttaagtctttaaaagtctgg
tctatgttggctgaccttgaagagagtctgggaacatttcagtccacaaaagctgtatat
gatcgtattattgacctccgcatcgcaacaccacagatcatcatcaattatgctatgttt
cttgaagagcacaactactttgaagaaagctttaaagcatatgagcgtggcattgctttg
ttcaagtggccaaatgtttatgacatttggaacacctacctcaccaagtttattgaccga
tatggcggaaagaagcttgagagagcaagagatttatttgaacaagcccttgatggctgc
ccagcaaagtttgcaaaaaccatttacctactgtatgccaaattggaggaggaatatggg
ttggctcgccatgccatggccgtttatgaaagggctacagaggcagtagaaataaatgag
aggcacgacatgttcaatatttacataaagagagcagctgaaatttatggagtcacctat
acaagagcaatataccagaaatctattgaggtcttgcctgatgaacacgcaagagatatg
tgtcttcggtttgctgatatggagagtaaactgggtgaaatcgaccgagccagggcaatc
tactcctattgttctcaaatctgtgatcctagggtgactgcaaatttctggcaaatgtgg
aaagagtttgagatccgtcatggaaatgaggatacagttcgagaaatgttaagaatcaaa
cgcagtgtccaggccacatacaacactcaggtcaatttcatgtcctctcagatgctaaaa
gccacaacaagctctacaggcacagtgtctgatcttgctccgggccaattgggtattgac
gacatgaaaatgcttgaacaaaaggcacaacagctagccgcagaggctgagagggataaa
ccaaaacctaaagaaaagattctctttgtcaggagtgatacttcacgttctgagctagca
gagctttccaaacaaatcaatccagatgaaattgacattgatgatgacgatgatgaaaac
caaggtccagatgaggtgcagcttgaacagaagagtgtcccaacagctgtgtttggtggg
cttaaagatgatcaagatgcacagtga
DBGET
integrated database retrieval system
