Eucyclogobius newberryi (tidewater goby): 140359947
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Entry
140359947 CDS
T10929
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny03015
mRNA surveillance pathway
eny04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140359947 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
140359947 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eny03021
]
140359947 (sympk)
03019 Messenger RNA biogenesis [BR:
eny03019
]
140359947 (sympk)
Transcription machinery [BR:
eny03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140359947 (sympk)
Messenger RNA biogenesis [BR:
eny03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
140359947 (sympk)
U7-dependent histone pre-mRNA processing factors
140359947 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
140359947
NCBI-ProteinID:
XP_072301302
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MNYVEEEEGSQKKAPPKIIDMTTSEKVVDLLNQAALIPTDEKLTVLKQVQELIVNKDPSL
LDNFLDELIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLLRDDSVNVIKKG
ILTLTQLYKVSLQWLVRSKAITEMQEACWDMVTQMKGEVLELLDSENDGVRTHAIKFTEA
LIIALSPRTQDSEVPKRQENDISLDKVPKDHSYIRYDALCEEGKTALEKLLEFMVHPAIS
SINLTTALGSLATIARQRPMFMSQVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVL
KHPCSLEFHAQISTLLQDLGMPQSEIARSTPALREQRKRPRHEQYTEGKKVKIEPALIDE
DEDKEEPAPLSVPKPAPAPVAQSAIDLTAEFLRPLLNAENVANLVLISMVYLPDVMPASF
QSTYTPVESAGTDAQIKHLARLLSTQMTGAGIGPGLEQSKNKDTGEDEGSSKDSIIKRKA
PMVVQNISVVGANTEKTPEIPVVKRLPEPILPTVQPKTSGSSGRKKVFRLSDVIQPLTDT
QLETLSSKAVKRILHSEKTIAQSGMSQVRVKLLSRLVTQFEGIMKGDVLEFILEDIRTRS
DLAFSLLYQEYTTYLSQMPSGLLDSYDHCLYTLLSGLQEKPEQRDGLFTKLVLEAPIITD
SALEVIRRYCEDESRVYLGMTTLKELIFNRPSRQFQYLHVLLDLSSHEKEKVRTTALGFL
KRMYEKEHLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVAAPWTEETVRQCLFLYLS
LLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPDLLLLVENCPKGAETLV
TRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKSEVIQALPKLIKLNPI
VVKEVFNRLLGTQHSEGTSSVSPLTPGDLLIALHNIDSIKCDMKSIIKATNLCFGEKNVY
TSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGGFVMNILARLIVKQVWKYPKVWE
GFVKCCQRTRPQSYSVLLQLPSVQLNSVFERCPEMRDPLLQHVLSFTPHQRAHVSSSIMA
VLEVHKPEPETEIEAAPPPAATPEPERTEQRRDEEEEPMEQEPEGVNAARQIETAAVQEE
ASPRPDTEEPMDDGQTEAADPQQQQQDGDAEAEDGTEAEE
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgtagaggaagaagaaggttcccaaaagaaagcccctccaaagatcattgac
atgaccaccagtgagaaggtggttgatcttctaaatcaagcagctcttattcccacagac
gaaaaactgacagtgctcaaacaggtgcaagagctcatagtcaacaaggacccgtcgctt
cttgataactttctggatgaactgattgcttttcaaacggacaaatcgatagaagttagg
aagtttgtcattggatttattgaagaagcgtgcaaaagagacaatgagctgctcctcaga
ttgatcgctaacctgaacatgctgctgagagacgacagcgtgaacgtgatcaagaagggc
atcctcacactcacacaactgtacaaagtctctctacagtggctggtgcggtccaaggcg
atcacggagatgcaggaggcgtgctgggacatggtcacgcagatgaagggggaggtcctg
gagctgctggactccgagaacgacggcgtcagaacgcacgccatcaaattcaccgaggct
ctgatcatcgccctgtcgccgcggacgcaggactccgaggtccccaaacgacaagagaac
gacatcagtttggacaaagtacccaaagaccactcctacatccgctacgacgcgctgtgc
gaggaggggaagacggcgctggagaagctgctggagttcatggtgcatccggccatctcc
agcatcaatctgaccacggccctgggctcgctggccaccatcgcccgacagaggcccatg
ttcatgtcccaggtggtgcaggcctacgagacgctgcacgccaacttgcccccgactctg
gcgaagtctcaggtgagcagcgtgcgtaagaacctgaagctccacctggtggccgtcctg
aagcacccgtgcagtctggagtttcacgctcagatcagcaccctgctccaggacctgggg
atgcctcagagcgagatcgcccgctccacgcccgccctccgcgagcaacgcaagcgaccg
cgacacgagcagtacacggagggcaagaaggtcaagatcgagccggccctgatcgacgag
gacgaggataaggaggagccggcccctctgtccgtgcccaaacctgccccggcccccgtg
gcccagtccgccatcgacctcacagccgagttcctgcgcccgctcctgaacgccgagaac
gtcgccaacctggtgctgatcagtatggtttacctgcccgacgtgatgcccgcctcgttc
cagtccacgtacacaccggtcgagtccgctggcaccgacgctcagatcaaacacttggct
cgactcttgtccacgcagatgacgggggccggcatcggaccaggtctggagcagtccaaa
aacaaagataccggagaagacgagggcagcagtaaagactcgatcatcaaacgtaaagct
cccatggtggtgcagaacatttctgtggtgggagcaaacacagagaaaaccccagagatc
ccagtggtcaagaggctccctgaacccatcctgcccacagttcagcccaaaacgtcaggc
tcaagcgggaggaagaaggtttttcgtttgtcggacgtgattcagcctctgaccgacact
cagctggaaaccctgtcgtccaaagccgtcaaacgcatcctgcactcggagaagaccatc
gcccagagcggcatgtcccaggtgcgagtgaagctgctgtcgaggctggtgactcagttc
gagggcatcatgaagggggacgtgttggagttcatcctggaggacatccggacccggagc
gacttggccttctccctgctgtaccaggagtacaccacgtacctgagccagatgccgtcc
ggtctgctggacagctacgaccactgtctgtacacgctgctgtccgggctgcaggagaag
cccgagcagcgggacgggcttttcaccaaactggtcttagaggctccgatcataacagat
tctgctttggaagttatacggcgttactgtgaggacgagtcgcgagtctatttggggatg
accacgttaaaggagctcattttcaaccggccttcccgacagtttcagtatctccacgtg
cttctggatctcagctcgcacgaaaaggaaaaagtgcggacgacggcgttgggtttcctg
aagcgaatgtatgaaaaagagcatttgagagactacatcgagaagtttgccttgaactac
atgcagctgctggttcatcccaatcctccatcgctgctgtttggggctgacaaagacaca
gaggtggccgcgccctggacggaggaaactgtgcgtcagtgtctgttcctttatctgtct
cttcttcctctgaaccaccgcctggttcacgaactcgcttccgtgtacaccgaggccatc
gccgacatcaaacgcagcgtgctcagggcaatcgagcagccgattcgtgggatgggcatg
aactcccctgatttgctgctgttggtggaaaactgcccaaaaggagctgagacacttgta
acgcgctgtcttcatattctcactgacaaagttcctccgtctccagagctggtggagcga
gtgcgagatctttaccacaagagagtcccagatgtgcgcttcctcatcccggtcataaac
ggattagaaaagagtgaagttatccaggctcttcccaagttaatcaaactcaacccaatt
gtggtgaaagaagtgttcaaccggttattgggcacgcagcacagcgagggcacttcgtca
gtttctcctctcacgcccggagacctgctgatcgctttgcacaacatcgactcaatcaaa
tgtgacatgaaatcgattataaaagccaccaacctgtgttttggagagaagaacgtttat
acctcggaggtgttggcggtggtgatgcagcagttgatggagcagaatcctctcccgatg
cttctgatgaggacggtgatccagtccctcaccatgtatccacggctgggcggcttcgtc
atgaacattttagcgcggctcatcgttaaacaggtgtggaagtatcctaaagtgtgggag
gggtttgtgaagtgctgccagaggacgaggcctcagtcctacagcgtgctcctgcagctg
ccttcagtccagctcaacagtgtgtttgaacgctgccccgagatgagagacccactactg
caacacgtgctgtccttcacgcctcaccagcgagctcacgtttcctcgtccatcatggct
gttctggaggtacataaacccgagcccgagacagagattgaagcggctcctccaccggcc
gcgacgcccgagcccgaacgaacggagcaacggcgcgacgaagaggaggagcctatggag
caggagccagagggcgtgaacgcggcgagacagattgagacagcagcagttcaggaggaa
gcttctcctcgaccagacactgaggagcccatggacgatggtcagacagaagccgcagac
ccgcagcagcagcagcaggacggagacgcagaggccgaggacggcaccgaagctgaagaa
taa
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integrated database retrieval system
