Eucyclogobius newberryi (tidewater goby): 140365556
Help
Entry
140365556 CDS
T10929
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny04510
Focal adhesion
eny04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
140365556 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
140365556 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
eny00536
]
140365556 (col2a1b)
Glycosaminoglycan binding proteins [BR:
eny00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
140365556 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
140365556
NCBI-ProteinID:
XP_072308151
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MLGFMDSRTLLLLLASQACLLTVVRCQDELTEEDELSCLQDGQRYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCAKPEIPFGECCPICAPDPSTPIGVPGAKGQKGEPGDIIDVV
GPRGPGGPMGPPGEQGQRGSRGDKGEKGNPGPRGRDGEPGTPGNPGPPGPPGPNGTPGLG
GNFAAQMTGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQA
GPMGPRGPSGSSGKPGDDGEAGKSGKPGDRGPSGPQGARGFPGTPGLPGIKGHRGYSGLD
GAKGETGALGSKGESGSPGESGAPGPMGPRGLPGERGRPGSSGVAGARGNDGMPGPSGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDSGIPGFKGEAGPKGEFGPV
GLQGAHGPQGEEGKRGPRGEPGSAGPLGPPGERGTPGNRGFPGQDGLPGPKGAPGERGPS
GASGPKGAGGDPGRPGESGLPGARGLTGRPGDAGPQGKGGPSGAAGEDGRPGPPGPQGGR
GQPGVMGFPGPKGASGEPGKSGEKGLGGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPHGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGSKGAIGPAGAAGAQGPPGLQGMPGERGGAGIPGPKGDRGDFGEKGPE
GAAGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPNGPAGFA
GPPGADGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVTGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPSGKDGPKGVRGDGGPHGRQGDAGLRGPAGPSGEK
GDAGEDGPPGPSGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDR
GPPGPVGSPGLTGPAGEPGREGNPGSDGPPGRDGSVGVKGDRGNTGPAGAPGAPGAPGAS
GPVGPTGKQGNRGEAGAQGPAGSPGPAGARGMPGPQGPRGDKGEGGEGGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPSGPSGQRGPPGPVGPSGKDGMNGLPGPIGPPGPRGRSGDS
GPAGPPGNSGPPGLPGPPGPGIDMSAFAGLGHTDKGPDPLGYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVYCN
METGESCVLPKPSNFPRKNWWSSKSKERKHIWFGETMNGGYRFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCAKHTGQWSKTVFEYRSQKTSRLPLVDIAPMDIGGADQEFGVNVGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttaggctttatggattccaggactttactgctacttttggcgtctcaagcttgtcta
ttaaccgttgtgagatgtcaggacgaactgacggaggaggatgagctgagctgtttacag
gatggacagcgctatagcgacaaagatgtgtggaaacctgagccctgccgcatctgtgtg
tgtgacactggcactgtcctgtgcgatgagatagtctgcgaggagctcaaagactgtgcc
aaacctgaaatcccatttggagagtgttgtcctatctgcgctcctgacccatctacaccc
atcggagtcccaggtgctaaggggcagaaaggtgaacccggagacattattgatgttgta
ggaccaagaggaccaggtggcccaatgggcccaccaggagagcaaggacagcgcggatca
agaggagacaaaggcgagaagggaaaccctggccctcgtggcagagatggtgagcctggc
acccccggtaaccccggccctcctggaccccccggacctaatgggactcctggacttgga
gggaactttgctgctcaaatgactggtggtttcgatgagaaatctggcggtgcacagatg
ggagtaatgcaaggaccaatgggccctatgggtcccagaggaccacctggcccctctgga
tcacctggaccacaaggtttccaaggtaacccaggagaagctggagagcccggacaagct
ggcccaatgggtcctcgtggcccctctggatcctctggaaaacctggagatgatggggaa
gctggaaaatctggtaaacctggtgaccgtggaccatctggacctcagggagctcgtgga
ttcccaggaactcctggtcttcctggcatcaaaggacacagaggttattcaggtcttgat
ggagcaaagggagaaactggagctcttggttcaaagggagagtctggttcccctggtgag
agtggtgcccctggaccaatgggccctcgcggtctgcctggtgagagaggacgtcccgga
tccagtggagttgctggtgcaaggggaaatgatggtatgcctggtccttctggtcctccg
ggtcccgttggtccttctggcgctccaggcttccccggctctccaggttcaaagggagaa
gctggtccaacaggcgctcgtgggcctgagggtgctcagggacctcggggagagtcaggt
actcctggatcatcagggccttcaggtgcttctggaaaccctggtacggatggtattcct
ggagctaaaggatcagctggtgctcccggtatcgccggtgcccctggtttccctggacct
cgtggacctcctgggcctcagggagccactgggccgcttggaccaaaaggaacctcggga
gactcaggtattcccgggttcaagggtgaagctggaccaaaaggagaatttggaccagtc
ggtcttcagggagctcacggcccccagggagaagagggaaagcgtggacccagaggtgag
cccggttcagccggaccacttggacctcccggagagaggggaaccccaggtaaccgtggt
ttccctggtcaagacggcctgcctggtcccaagggagcccctggtgagcgaggaccctcg
ggtgctagtggtcctaagggtgctggcggtgaccctggacgtcctggagaatctggtctg
cctggagccagaggtctaactggacgccctggagatgctggtcctcaaggcaaaggggga
ccctcaggagctgctggcgaggacggtcgccctggacctccaggccctcagggaggccgc
ggacagcctggtgtaatgggattccctggacccaaaggagcatctggggaacctggaaag
tcaggagagaaaggactgggtggagcacctggtctaagaggtttgcctggcaaagatgga
gagactggtgctgcgggaccccctggaccagctggccccgctggagagagaggagagcag
ggacagcccggtccccatggtttccagggtctacctggacctcccggcccacctggtgag
gggggcaaacctggagaccagggtgttcctggagagggtggagctgcaggtgccactgga
cccagaggagagcgagggttccctggtgagagaggtgcagctgggccccagggtctgcag
ggacccagaggtctgcctggaacccctggaactgacggatccaagggagctattggacct
gctggagctgcaggagctcagggaccccccggcctgcaaggcatgcctggagagagagga
ggtgctggcattcccgggcccaaaggagacagaggtgattttggagagaaaggacctgag
ggtgctgccggtaaagacggagctagaggtctcactggacccattggtcctcctggccct
ggcggtcccaatggtgaaaagggtgaatcgggtcctgctggtccttctggagctcctgga
acccgtggtgcccctggtgacagaggtgagactggacccaatgggcctgctggatttgct
ggacctcctggtgctgatggtcagcctggaatcaaaggagaacagggagagtcaggacaa
aagggtgatgctggtgcccctggaccccagggaccatctggtgcccctggccctgcaggc
cctacaggtgttactggaccaaaaggtgctcgtggtgctcaaggacctcctggtgccact
ggtttccctggagctgctggacgtgttggacctcctggccccaatggcaaccctggcccc
gctggtcctgctgggccttctggtaaagatggacccaagggagtgagaggagatggcggt
cctcacggtcgacagggtgatgctggtcttcgtggtcctgcaggtccctctggagagaag
ggagatgcgggagaagatgggcctcctgggccttctggtccctctggtcctgcaggattg
gctggacagcgaggtattgtcggtctacctggacaacggggagagagaggattccctggt
ctgcctggaccttctggagagcctggaaagcagggagcctctggtggtgctggggaccgt
ggacctcctggacctgtcggatctcctggactcactggacctgctggagagcctggtaga
gagggtaatccaggatcagatgggcctccgggtagagatggttctgttggagttaaaggt
gatcgtggtaacactggtccggctggtgcccctggtgctccaggtgcccctggggcttct
ggtcctgttggtcccactggcaaacagggaaacagaggcgaggctggcgcacaaggacct
gcaggatctcctggacccgctggagcaagaggaatgcctggacctcaaggacctcgtggt
gacaaaggggaaggaggagagggtggagagagaggacagaagggacaccgaggcttcact
ggtctgcagggtctgcccggacctccaggtcaagctggagaccagggagccactggaccc
tctggaccttccgggcaaagaggaccacccggacctgttggcccctctggtaaggacggc
atgaatggactcccaggaccaattggaccccctggaccacgaggacgcagtggagacagc
ggccccgctggacctccaggaaactctggaccccctggtcttcccggccctccaggccct
ggcattgacatgtcggcttttgctggtcttggtcacactgacaagggtccagatcctctc
ggatacatgagagctgaccaggcttctggaaacctccgtcagcacgatgctgaggtcgat
gccacgctcaaatccctcaacaaccagattgagaacatccgcagcccagaaggatccaaa
aagaaccctgcccgcacatgtagagacctgaaactgtgccatccagactggaagagtggt
gaatactggattgatccaaatcaaggctgcactgttgatgccatcaaagtctactgcaac
atggagaccggagagtcctgtgtgctccctaaaccttctaactttcctcgtaagaactgg
tggtcaagcaagagcaaggagcgcaaacacatctggtttggagagacaatgaatggtgga
taccgctttagctatggtgatgacagcctggcacccaacactgctgctattcagatgact
ttcttgagactgctgtccactgaggcttcacagaaccttacgtaccactgcaagaacagt
gtggcctacatggacgcctcaacaggcaacttgaagaaggctgtgctgctgcagggctca
aacgatgtggagattagagccgagggcaacagccgcttcacttacagtgtgatggaggac
ggctgcgcgaaacacacaggacagtggagcaagacagtgtttgagtacagatcacagaag
acatctcgactgcctcttgtggacattgcccctatggatattgggggagcagaccaggag
tttggagttaatgttggcccagtttgcttcttgtaa
DBGET
integrated database retrieval system
