Eucyclogobius newberryi (tidewater goby): 140367385
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Entry
140367385 CDS
T10929
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny03013
Nucleocytoplasmic transport
eny03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140367385 (upf2)
03015 mRNA surveillance pathway
140367385 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eny03019
]
140367385 (upf2)
Messenger RNA biogenesis [BR:
eny03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140367385 (upf2)
mRNA cycle factors
P-body specific factors
140367385 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
140367385
NCBI-ProteinID:
XP_072309950
LinkDB
All DBs
Position
Unknown
AA seq
1268 aa
AA seq
DB search
MPAEGKRVNMDEKEFSFNNKDRDGERRATPRDKAKEDTKMSGKKDGGKEEKRKRIEEEKK
KKEEKERKKKEEEKQKAEEELKKKEEEEKRQQEEHTKKLQEEESRRQHEEEAALLKEKEE
CHQLHQEAWERHHCRKELRSKNQSAQDGRPEETFFSRLDSSLKKNTAFVKKLRTLTEQQR
DSLSNDFASLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPLLLQAWKK
HFEARKEDKTPNVSKLRTDLRFIAELTVVGLFTDKEGLLLIYEQLKNIINTDRENHTHVS
VIISFCKHCGDDVAGLVPRKVKVAAEKYSLTFPPSEIINAEKQQPFQNLLREYFTSLAKH
LKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADLLDENMPE
LPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAFVPAILFKDN
EKTNQGKDKDDTKDANEGKDATTAEELELELEALDIADEPLELEGPEETENEDLAKKLID
DQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKANRRKLVRALF
TVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRF
IGELAKFKMFPKTDTLHCLKMLLSDFTHHHIEMACTLLETSGRFLFRSPESHLRTSVLLE
QMMRKKQAQHLDARYITMVENAYYYCNPPPIEKTVRKKRPPLQEYIRKLLYKDLSKVTTE
KVLRQMRKLPWQETETKSYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGV
LEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFICFGVNQDGTPSL
LDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLVYFQRYIWWKKSVDVWTKDHPFP
IDIDYMITDTLELLRPKMTLCCSLEEAIKQVVDLEREVLVKLGMAMEKDGRSSAMSEGEA
LDEDDDDDDEEGGAETEEQSGNESELNEPEDDEGSDNDDEEHEEEEEENTDYQTDSNKEN
ETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQL
KSQLKKGGGSQPSIRDGDADISDTMQFVMLTRKGNKQQYKILNVPLSSHLAANHFNQQQA
EQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAQANTNRERRPRYQHPKGAPNADLI
FKTGGRRR
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaaggcaagcgtgtaaacatggatgagaaagagttttccttcaataacaaa
gaccgagacggagagaggagagctacacctcgagataaagcaaaggaagatactaaaatg
agtggtaaaaaagatggtggcaaagaggagaagcgaaaacgcattgaagaggagaagaag
aagaaggaggaaaaggagcgtaagaaaaaagaggaagagaaacagaaagctgaagaagaa
ttgaagaagaaagaggaagaggagaagaggcagcaagaggagcacacaaagaagctccag
gaggaggagagcaggcgacagcatgaagaggaggcagcccttctgaaggaaaaggaagag
tgtcatcaactccaccaggaagcctgggagcgacatcactgcaggaaggagttgcgtagc
aaaaatcaaagtgcccaagatggtcgtcctgaagaaacctttttcagtcgactggattct
agtctcaagaagaacaccgcttttgtcaaaaaactgcgaacacttactgaacagcaacgt
gactcgctctcaaatgactttgcctctctcaaccttagtaaatatattggagaagcagtg
agctctgttgtagaggcaaaacttaagatttcggatgtgggctgtgctgtccatctttgc
tctctgtttcaccaacggtatgcagagtttgccccgttactgttgcaggcctggaaaaag
cacttcgaagctagaaaagaggataagacccctaatgttagtaagctgcgcacagacctg
cgctttattgcagagctcactgttgtaggactcttcactgacaaagaagggcttctgctc
atttatgagcaactgaaaaatatcatcaacactgaccgggagaatcacactcatgtgtca
gttatcataagcttctgcaaacattgtggagatgacgtagcaggtctagtaccgcgcaaa
gtgaaagtggctgcagagaaatatagtttaacgtttcctccaagtgagattatcaacgca
gaaaaacaacagccttttcagaaccttttacgggaatacttcacatcacttgccaaacac
ctgaagaaggaccacagagagttacagaacatagagagacagaaccgacgaattcttcat
tcgaaaggagaactgagtgaggatcgacacaagcagtatgaggagtttgcaacatcctac
caaaagctattggccaatactcagtctttagctgatctgcttgatgaaaatatgccagag
ttacctcaagacaagactgtgcaagaggagcatggccctggcattgatatttttacccct
ggaaagcctggagaatatgaccttgagggagggatatgggaggatgaagatgcccgaaac
ttttatgaaaacttggtcgacttgaaggcatttgtcccagccatcctcttcaaagacaat
gagaaaacaaatcaaggaaaagacaaggatgataccaaagatgccaatgagggaaaggat
gccaccactgctgaggagctagagttagaattggaagccttggacatcgcagatgaacct
ctcgagttggagggacctgaagaaacagaaaatgaagacctggccaaaaaactaattgat
gaccaagaacaagaagacgaggaggccaacaccggctcacacctgaagctcattgtagat
gcttttatccaacagcttcccaactgtgtaaacagagatctcattgataaggctgccatg
gacttctgcatgaacatgaataccaaggccaacaggaggaaactggttcgggctctgttt
acagttcctcggcaaaggcttgatttgctacctttttactctcgcttggtggccactctc
catccttgcatgtcagatgtggctgaggatctttgttccatgctaaagggcgacttcaga
tttcatatacgtaagaaggaccagataaatatcgaaacaaaaaacaaaactgtcagattt
attggggaactggccaagttcaagatgtttcccaaaacggatacacttcattgtcttaag
atgttgctttcagatttcactcatcaccacattgaaatggcatgcacactgctggagacc
tctgggcggtttctctttaggtcacctgagtctcatctgcgtactagtgttctcctggaa
caaatgatgcgcaaaaagcaagctcagcacttggatgcccgttatataacaatggtggaa
aatgcttactactactgtaacccccctccaattgagaaaactgtgaggaaaaagaggcct
ccactgcaagaatacatccgcaagctactgtacaaggatttgtccaaggtcacaactgag
aaggttttaagacagatgcgaaagctgccctggcaggaaactgagaccaagagctacttg
atctgctgcatggtcaacatttggaatgtcaaatacaacagtatccactgcgtggccaat
ctgctggcaggacttgtggcttaccaagaagatgtaggtatccatgtggtggatggagtc
cttgaggacatccgactaggaatggaggttaatcaaccaaaattcaaccaacgtcgcatt
agtagtgccaagtttcttggtgaactctataactaccgtatggtggagtctgctgtgatt
ttccgcaccctgttctccttcatatgctttggggtaaatcaagatggtacccccagtcta
ctggatcccccagagcacctgttccgcatccgccttgtttgcacgttgcttgacacctgt
ggtcaatactttgatcgaggctccagcaaaaagaagttggactgtttcctcgtatatttt
cagaggtacatttggtggaagaagagcgtggacgtttggaccaaagatcacccatttcct
atcgacattgactacatgatcactgatactctagaactgttgcggcccaaaatgacgctc
tgttgctccctggaagaggccatcaagcaggttgtagatctggaaagggaggtgctcgtc
aaactagggatggccatggagaaggatggtcgctccagcgccatgagtgaaggcgaagct
cttgatgaagatgatgatgatgacgatgaagagggaggtgctgagaccgaggagcagtcc
ggcaacgagagtgaattgaatgaaccagaagatgatgaggggtcagacaatgatgacgag
gaacacgaagaagaggaagaagagaacacagactaccagacagattccaacaaagaaaat
gagactgatgaagagaacaatgaggtgaccatccgcggtggaggactaaagcatgtggcc
tgtgctgaagatgaggacttcatacaggctctggataagatgatgttggagaaccttcaa
cagcgtagtggtgaggcagtgaaggtgcaccagttggatgtggccattcctctccagttg
aagagccagttaaaaaagggtggtggtagccagccgagcatcagagatggagacgctgac
atatctgacaccatgcaatttgtcatgctcacacgcaaaggcaataagcagcagtacaag
atcctgaatgttcccctgtcatctcacctggcggcaaaccacttcaaccagcagcaggca
gagcaggaggaacgcatgagaatgaagaaactcaccttggacattaatgaaaggcaggag
caggaggactaccaggaaatgatgcagtccttggctcagcgtccagcccaagcaaacacc
aatagagagcgcaggcctcgctatcagcacccaaaaggggcgccaaatgcagacctcatc
ttcaaaactggtggaaggagacgttga
DBGET
integrated database retrieval system
