Eucyclogobius newberryi (tidewater goby): 140367440
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Entry
140367440 CDS
T10929
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
eny Eucyclogobius newberryi (tidewater goby)
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eny03016
]
140367440 (rtcb)
Enzymes [BR:
eny01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
140367440 (rtcb)
Transfer RNA biogenesis [BR:
eny03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
140367440 (rtcb)
Prokaryotic type
tRNA splicing ligases
140367440 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
140367440
NCBI-ProteinID:
XP_072310023
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKISSNCWRIKKGFVPNMQVEGNFYVNESLEKLMFEELRNASRGGGIG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNPEAVVSPGGVGFDI
NCGVRLLRTNLDECDVQPVKEQLAQALFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARIFS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HIVDGKQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagttacaacgatgagctgcagtacttggacaagatcagcagtaattgctgg
cggattaaaaagggctttgtgcccaacatgcaggttgaaggaaacttctatgtgaacgaa
tccctggagaaattgatgtttgaggagcttcgtaacgccagtcgaggaggaggtattggt
ggattcctcccagcaatgaaacagattggaaacgtggcagcactgcctggaattgtacac
agatccataggtcttcctgatgtccattctggatatggatttgcaattggaaacatggca
gcttttgatatggataaccctgaagctgtggtttccccaggtggtgtcggctttgatata
aactgcggagtgcgtttgctacggacaaatcttgatgagtgcgatgtccagccagtaaaa
gagcagttggctcaggctctgtttgatcatatccctgtgggagtgggatccaaaggagtt
attcccatgagtgccaaagaccttgaggaagctctggagatgggtgtggactggtctctc
agggaaggctatgcctgggctgaggataaagagcactgtgaggagtatggcaggatgttg
caggcagatcccaataaagtttcatccaaggccaagaagaggggactgccacagctggga
acccttggggcaggaaatcattacgctgaaatccaggttgtggatgaaatatacaatgac
tatgctgctaaaaaaatgggcattgaccataaaggccaggtgtgtgtgatgatccacagc
ggaagcagaggtcttggccaccaagttgccactgatgccttagttgccatggagaaggca
atgaaaagggacaagatcactgtgaacgaccgtcagctggcatgtgcccgaatcttttca
caggaaggacaagactatctaaaaggcatggctgcggctggcaactatgcctgggtcaac
cgttcatctatgaccttcctcactagacaggccttttctaaagtttttgggactacaccc
gacgacttggatatgcatgtcatctatgacgtttcccacaatattgctaaagttgaggaa
cacattgttgatggaaaacagaaaacactgttaatccatcgcaaaggctccaccagggcc
ttcccccctcaccatccactcattcctgttgactaccagctcacaggtcagccggtgtta
ataggtggaaccatgggaacatgcagttatgtcttaactggcacagagaaagggatgact
gaaacatttggcacaacatgtcatggagcgggccgagccctctctagagcaaagtcacgc
agaaacttggacttccaggatgtgttggacaaactcgctgataagggtatagctatccga
gtggcttcacccaagctagtgatggaggaggctcctgaatcatacaaaaatgtgacagat
gttgtaaacacgtgccacgatgctggaatcagcaaaaaagccatcaaactgcgaccaata
gctgtgattaaaggatga
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