Eucyclogobius newberryi (tidewater goby): 140369154
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Entry
140369154 CDS
T10929
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny04510
Focal adhesion
eny04512
ECM-receptor interaction
eny04820
Cytoskeleton in muscle cells
Brite
Glycosaminoglycan binding proteins [BR:
eny00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
140369154 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
140369154
NCBI-ProteinID:
XP_072312514
LinkDB
All DBs
Position
Unknown
AA seq
1443 aa
AA seq
DB search
MFSFVDIRIALLLSVAVVLARGQGEDDFAISSCTSDGQLYNDKDVWKPEPCQICVCDSGS
ILCDDVICEEGYDCDDPIIPDGECCPICPDGPITDSPPLSDVPGDKGDLGPVGPPGNDGL
DGQPGLPGPPGPPGPPGLGGNYSPQMSYTDHSKSSGPPQPGPMGPRGPRGPAGSPGNSGP
QGFTGPAGEPGEPGAPGPMGSRGAAGPPGKNGDDGEPGKAGRPGERGPAGPQGARGFPGT
AGLPGIKGHRGFSGLDGAKGDSGPAGPKGEAGTSGENGIPGAMGARGLPGERGRPGSPGP
SGARGNDGNSGPAGPPGPTGPAGPPGFPGGAGAKGESGPQGSRGSEGPQGARGEAGNPGP
GGAAGAAGAPGSDGSPGAKGSPGSAGIAGAPGFPGTRGPAGAQGGVGAAGAKGNNGEPGL
SGVRGEPGVKGEPGPAGVQGMPGPGGEEGKRGGRGEPGGAGARGPPGERGGPGARGFPGS
DGGAGGKGAPGERGAPGPLGAQGASGEAGNPGAPGVPGSKGVTGSPGSPGSDGKAGPSGA
SGQDGRPGPPGPSGSRGQPGVMGFPGPKGTNGEPGKAGERGAPGASGALGAPGKDGDVGA
PGPSGPAGAAGEKGEAGSAGPTGFQGIPGPQGATGETGKPGEQGGPGEVGAPGPSGSRGD
RGFPGERGGPGAAGPIGPRGSPGAAGNDGAKGEPGAGGAPGAAGSPGMQGMPGERGSGGL
PGAKGERGDGGPKGPDGAAGKDGSRGMTGAIGGPGPSGAPGEKGEPGAVGISGPTGPRGS
PGERGETGPGGPAGFAGPPGMDGQPGAKGESGDSGPKGDAGAPGPSGPVGGSGPQGPSGP
TGAKGARGGAGPPGATGFPGPAGRVGPPGPSGASGAPGPNGPIGKDGPRGARGETGPAGR
PGEVGGAGPAGLSGEKGSPGADGAPGSPGLPGPQGLGGTRGIVGMPGQRGERGFSGLPGP
GGEPGKQGPAGLVGERGPPGPAGPPGLSGASGEAGREGSQGHDGAPGRDGSSGPKGDRGE
SGNAGSPGAPGAPGAPGAVGPSGKSGDRGETGPAGVSGPAGPAGARGSAGAVGGKGDRGE
AGEAGDRGHKGHRGFSGMQGLPGPAGPSGERGPAGVNGPAGPRGPSGSNGSPGKDGVNGM
PGPLGPPGPRGRNGEMGPAGPPGPPGPPGPPGAAGGGFDFVSQPLQEKGPDPLRGGQYRA
DDPKVIADRDTEVDSTLKTLTQKIENIRSPDGSMKSPARMCRDLRMCHPEWKSGSYWVDP
NQGSPLDAIKVHCNMETGETCIYPTQSTIPMKNWYISREKKHVWFSESMTGGFQFQYGSE
GSDSEDVSIQMTFMRLMSNQASQNLTYHCKNSIAFTDAATGNRKKALLLQGSNDVEIRAE
GNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGVEVGPV
CFL
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggatagcgctgctgctcagcgtggcagtggttttggcg
cgtggacaaggcgaggatgatttcgccatcagcagctgcacatcggatggacagttgtac
aacgataaggatgtatggaaaccagagccctgccagatttgcgtgtgtgacagcggaagc
attctgtgcgacgatgtgatctgcgaagaaggctacgactgcgacgacccaatcatccca
gacggagagtgctgccccatctgccccgatggacccattactgactccccacctctctca
gatgtcccaggagacaaaggagacctgggtcccgttggtcctcccggaaacgacggcctt
gacggacagcccggcctcccaggacctcccggcccccctggcccccctggcctcggcgga
aactactcacctcaaatgtcctatactgaccactccaaatccagcggccctcctcagccc
ggtcccatgggtcccaggggtccccgtggccccgctggatctcctggaaactctggtcct
caaggtttcactggccccgctggtgagcctggtgagcccggtgctcctggtcccatgggt
tctcgtggtgctgctggtcctcctggaaagaacggagatgatggtgagcctggcaaagct
ggtcgccccggtgagcgaggacccgcaggcccccagggagctcgtggtttccccggaact
gctggacttcccggcatcaagggacacagaggtttctccggtctagatggagctaaggga
gattctggacctgctggacccaagggagaggctggtacttctggtgagaatggcatcccc
ggtgctatgggtgctcgtggtctccccggtgagagaggccgccccggatctcctggacct
tctggtgctcgtggtaatgatggcaactccggccctgctggacctcctggacccactggc
cctgctggtcctcctggattccctggtggtgctggagctaagggagagtctggtcctcag
ggatctcgtggttctgagggaccccagggtgctcgcggagaggccggtaaccctggacct
ggtggagccgccggagctgctggcgcccctggatctgatggttcccctggtgctaaaggt
tctcctggttccgctggtatcgctggtgcccccggtttccccggaactcgtggtcccgcc
ggagcccagggaggcgtcggtgctgccggtgccaagggtaacaatggtgagcctggtctg
tccggtgttaggggagagcccggtgtcaagggagagcctggcccagccggtgtccaggga
atgcccggaccaggtggagaggagggaaagaggggaggccgtggagagcccggtggtgct
ggagcccgtggacccccaggagagcgcggtggtcctggtgctcgtggattccctggttct
gatggaggtgctggaggcaagggtgccccaggtgagcgcggtgcccccggacccttgggt
gctcagggagcctctggtgaagctggaaaccccggagctcctggtgtccccggatcaaag
ggtgtgactggaagccctggatcacctggctctgatggcaaagctggaccttctggtgcc
tctggacaagatggccgccctggaccccctggaccctctggatccagaggacagcctgga
gtcatgggattccctggacccaagggaaccaatggtgagcctggcaaagctggtgagcga
ggcgctcctggtgcttctggcgctttgggtgctcctggtaaagatggagatgttggtgcc
cctggaccttctggccccgctggagccgctggagagaagggagaggcaggatctgctgga
cctactggattccagggtattcccggaccccaaggagcaactggtgagactggcaaacct
ggagagcagggtggtcctggtgaggttggtgcccctggtccatctggatccagaggagac
agaggttttcctggtgagcgcggtggtcctggagctgctggtcccattggccctcgtggt
tctcctggtgctgctggaaatgatggtgctaagggagagcctggtgctggcggtgcccct
ggagccgctggatccccgggtatgcagggtatgcctggagagagaggatctggaggcctc
cccggagccaagggagagagaggcgatggtggccctaagggacctgatggtgctgcaggt
aaagatggttcccgtggtatgactggtgctattggagggcctggaccttctggtgctccg
ggtgagaagggagaacctggtgctgttggcatttctggacccactggacctcgtggatct
cctggtgagcgtggagagactggcccaggaggacctgctggattcgctggacctccaggt
atggatggtcagcccggtgctaagggagagtctggagactctggacccaagggagatgct
ggtgctcctggtccttctggacctgttggaggatctggtcctcagggaccttctggtccc
actggagccaagggcgctcgtggtggtgctggacctcctggtgctactggtttccctgga
cccgctggcagagttggacctcctggcccctctggtgcttctggagcccctggccccaat
ggacccattggcaaagatggacccagaggagctcgtggtgagactggacctgcaggacgt
cccggtgaggtgggcggtgctggacctgctggactgtctggagagaagggatctcctggc
gctgatggagctcctggttctcctggtctgcctggacctcaaggtttgggtggaacacgc
ggtatcgtgggcatgcccggacagcgtggagagagaggtttctctggtctgcccggaccc
ggaggtgagcctggaaagcagggacccgctggccttgtaggagagcgtggacccccagga
cctgctggaccccctggactatctggagcctccggagaggctggacgtgagggatctcaa
ggtcacgatggtgcccctggacgtgatggatcttctggacccaagggagaccgtggagag
agtggcaatgctggatcccctggagctcctggtgctcctggagcccctggagccgttggc
ccctctggcaaatctggtgaccgtggagagactggtcctgctggagtttccggccctgcc
ggccctgctggtgctcgtggatctgctggcgctgttggaggtaagggagacagaggagag
gctggtgaggctggagatagaggccacaagggacacagaggattctctggaatgcagggt
ctgcccggacctgctggcccatctggagagagaggacctgctggtgtcaatggacctgct
ggacctagaggaccctctggatccaatggctcccctggtaaagatggagtgaacggcatg
cccggacctctcggacctcctggacctcgcggtcgcaatggagagatgggacctgctgga
cctcctggacctcccggaccccctggaccccctggagctgctggtggtggatttgacttt
gtgagccagcctcttcaggagaagggcccagatcctctccgtggaggacaataccgcgct
gacgaccccaaggtcattgctgaccgcgacaccgaggtggacagcaccctcaagaccctc
acccagaagatcgagaatatccgcagccccgacggctccatgaagagccccgcccgcatg
tgccgcgacttgaggatgtgccaccctgagtggaagagcggctcatactgggtggatccc
aaccagggatctcctcttgatgccatcaaggtccactgcaacatggagactggagagacg
tgcatctaccccacccagtccaccatccccatgaagaactggtacatcagccgggagaag
aagcacgtctggttcagcgagtccatgaccggtggattccagttccagtacggcagcgag
ggatctgactcggaagacgtcagcatccagatgaccttcatgcgcctgatgtccaaccag
gcctctcagaacctcacgtaccactgcaagaacagcatcgccttcacggacgccgccacc
ggcaacaggaagaaggctctgctgctccagggctccaacgacgtggagatcagagccgag
ggcaacagccgcttcacctacagcgtcagcgaggacggctgcacgtcacacactggcaca
tggggcaagacagtcatcgactacaagacatcaaagacgtcccgcctgcccatcattgac
attgctcctatggatgttggtgctcccgatcaggaatttggcgttgaagtcggccccgtt
tgcttcttgtaa
DBGET
integrated database retrieval system
