Eucyclogobius newberryi (tidewater goby): 140373576
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Entry
140373576 CDS
T10929
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
KO
K11125
protein SMG5
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140373576 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eny03019
]
140373576 (smg5)
03032 DNA replication proteins [BR:
eny03032
]
140373576 (smg5)
Messenger RNA biogenesis [BR:
eny03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
140373576 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
140373576 (smg5)
DNA replication proteins [BR:
eny03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
140373576 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
140373576
NCBI-ProteinID:
XP_072316246
LinkDB
All DBs
Position
Unknown
AA seq
1082 aa
AA seq
DB search
MSGPDNEPEAKVLLIKRLYRAVVESVHKLDVIISSKASYRDVFKPENISLRNKLRELCVK
LMFLHPVDYGRKAEEVLWRKVYYEVIQVIKTNKKHIHSHSVLECAYRTHLIAGVGFYQHL
LLYIQSHYQLELHHCMDWTHVWDPLMGRKKPLSASPKEMEWAQLACHRCLVYLGDLARYQ
NELAGVEAEQLAERFYHQALSVMPLVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSETPF
EGAFGNLKRLFDKAAKMYQQVKKHELKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNSLV
DVELTSLCQNVLEDFNLVLFYLPPPCPSAPLNSPCAPEENDMVDSPCPTLPDALLFKMVL
ICLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEAETHVPPLNTEGPDE
VDLAPVSELIEKPLHNGALEQDSALSEQKDELCTDTPDVDKQKHKKKYTRLSRLRRRRCP
RKHTSGQDDSDLSEGFDSEEDEEEEGVNTAPSPKPSTTNPPVLKREPKRGAVRGQASWDS
GSEDEDGGTAFDVETDSDMNSQESRSDLEDMEESSEPQGPAQREEAPREEPIPTTNGPLI
HSDPSISSNLQAMSSQLFQAKRCFRLAPTFSNLLLRPPSAPQTPQTPQTPQAPTSMPQSD
TALPSQDTGPGQSEADISTANGTSDTDFESDSEGSQQNTTSPTPHEKTLQEKMQILTNQG
LIQVVKVFVDWLRTNTDIILMCAQSSQSLWNRLSVLLNLLPDASKLLDCAELGLSAEVLQ
LLSSSEQADMVQSVLLPEDRALRLLPPLSAAHRRLNWSQHGPHLSSLQECVVRVCCIRSF
GHFLTKLQGNILHFNPEAGIFTSISQSEQDSLLQQAQAHFRMAEEEARRNCLMRDMAQLR
LQLEVSQLEGTLQQPKALSSPYLVPDTAALCQHLPLLRQLANSGCFILIIPRTVIDGLDR
LKKDTPGARDGIRFLETEFRKGNRYIRCQKEVGRSFERDKMKRLDIEAWHMYKMVDSCRQ
LAVSQSPGEEDTGSMVTILTGRDVDQMSVQSTAMKSALQAVAAAGMELKHIRLFYQQWKE
MG
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggccagacaatgagccagaggcgaaagtcctgctgatcaaacggctatacagg
gcggtggtggagtctgtacataagctggatgtcatcatcagcagtaaagcgtcgtacaga
gacgtgttcaagccagagaacatcagtctaaggaacaagctgagagaactctgtgtcaaa
ctcatgttccttcaccctgtggactacggccgcaaggcagaggaagtgctctggagaaag
gtctactacgaagtcatccaagtcatcaagaccaacaagaagcacatccacagccacagc
gtcctggagtgtgcctaccgcacccacctcatcgctggagtgggcttctaccagcacctg
ctgctctacatccagtcacactaccagctggagctgcaccactgcatggactggacccac
gtgtgggaccccctcatgggtcgtaagaagcctttgtctgcgtctcccaaagagatggag
tgggctcagttagcgtgccaccgctgcctggtttacctcggagatttagcgcgttaccag
aatgagctggcaggagtggaggcggagcagctggccgagaggttctatcaccaggctctt
tcagtcatgcctcttgtgggcatgccctttaaccaactgggcacattggccggcagcaag
ttctacaacgtggaagccacttactactacctacgctgtattcaatcagagacccccttt
gagggagcttttgggaacctcaaacgccttttcgacaaagctgccaagatgtaccaacag
gtgaagaagcacgagctgaagaagctgtccccttctcgacagaggtccaaagacatcaag
cggctgctggtgagcttcatgtatctccaaagtctcctccagcccaagaacagcctggtg
gacgtggagctgaccagcctgtgccagaatgtgctggaggactttaacctggtgctgttc
tacctgccccccccgtgtcccagcgcccctctgaactcgccctgtgcaccagaggagaac
gacatggtggacagcccctgccccacactgcccgacgcgctgctcttcaagatggtgctc
atctgcctgatggtggtccacagcctgaagagaggaggctctaagcagtacagtgcatct
atcgccttcactctggccttgttctcgcacctggtgaaccatgtcaacatccgtctgcaa
gctgagctggaggaggcagagactcatgtgcctcctctcaacaccgaaggcccagatgag
gtggacctggctcctgtctcagagctgatagaaaagcctctgcacaatggggccctggag
caggacagcgcactgagcgagcagaaggacgagctctgcacagacacacctgatgtggac
aagcagaagcacaagaagaagtacacacgtctgtccagacttaggcgccggcgctgccca
cgcaaacacacctcagggcaggacgacagtgacctgagcgaaggcttcgacagtgaagag
gacgaggaggaggaaggagtcaacaccgccccaagcccaaagcccagcaccaccaaccct
cctgtcctgaagagggagcccaagagaggggccgtgaggggccaggccagctgggacagt
ggctcagaggacgaggacggaggcacggcctttgacgtggagacagactcggacatgaac
agtcaggagtctcgctcagacttggaggacatggaggagagctccgagccccagggccca
gctcagagagaagaggccccaagagaggagcccattcccaccaccaatgggcccctcata
cactcagaccccagcattagctccaacttacaggccatgtcctcccagctcttccaggcc
aaacgctgctttcgtctagctcccaccttcagcaacctgctactcaggcccccaagtgcc
ccgcaaaccccacaaaccccacaaaccccacaggcccccacaagcatgcctcaaagtgac
actgcgttgccctcacaggacacgggccctggtcagagtgaggcagacatcagcacggcc
aatggaaccagtgacaccgattttgagtccgactcggagggcagccaacagaacaccacc
tcgccaacgccacatgaaaagactctgcaggagaagatgcagattctgaccaatcagggc
ttgattcaggtggtgaaggtgtttgtagattggctgaggacaaatactgacattatcctg
atgtgtgcccagagttcccagagtctctggaaccgcctgtctgtgctgctcaacctgctt
ccagacgcctccaagctgctggactgtgcagagctgggccttagtgcagaggtgctgcag
ctcctgagcagcagtgagcaggcagacatggtccagtctgtgctgctaccagaggacagg
gccctcagactgctcccgcccctcagcgcagcccacaggaggttgaactggagccagcac
gggcctcacctcagctccctgcaggagtgtgtggtgcgtgtgtgctgcattcggagcttt
gggcacttcctgaccaaactccagggcaacatccttcacttcaaccctgaagcaggcatc
ttcaccagcatcagccagtctgagcaagattctctgctgcagcaagcccaggcccacttc
agaatggctgaagaggaggctcgcaggaactgtctgatgagggacatggcccagctcagg
ttacagttggaggtgtcccaactggagggcactctgcagcagcccaaagccctatcgtct
ccatacctggtcccggacacagcggccctgtgccagcacctccccctcctccggcagctg
gctaacagcggctgcttcattctcatcatcccccgcactgtgattgacggcctggacaga
ttgaaaaaggacactccgggggccagagatgggatccgctttctggaaacagagtttcgg
aaaggcaacaggtacatccgctgccaaaaagaagtggggcggagttttgaaagggacaaa
atgaagcgattggacatagaagcctggcacatgtacaagatggtggacagctgccggcag
ctggcggtgtcccagagccctggagaagaagacacaggcagcatggtgaccatcctcact
gggcgagacgtggaccagatgtctgtccagtccacagccatgaagtcggcgctccaggct
gtggcagcggcgggcatggagctgaagcacatccgcctcttctaccagcagtggaaggag
atgggctga
DBGET
integrated database retrieval system
