Eucyclogobius newberryi (tidewater goby): 140374752
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Entry
140374752 CDS
T10929
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140374752 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eny03021
]
140374752 (pcf11)
03019 Messenger RNA biogenesis [BR:
eny03019
]
140374752 (pcf11)
Transcription machinery [BR:
eny03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140374752 (pcf11)
Messenger RNA biogenesis [BR:
eny03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
140374752 (pcf11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
PCF11_charged
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Pentapeptide_2
SHOCT
Motif
Other DBs
NCBI-GeneID:
140374752
NCBI-ProteinID:
XP_072317851
LinkDB
All DBs
Position
Unknown
AA seq
1468 aa
AA seq
DB search
MDCAVIRGAAAGGKRTEMEDAAAREDACREYESSLEDLTFNSKPHINMLTILAEENIAFA
RDIVGIIEAQISKAPAQEKLPVLYLVDSIVKNVGRDYLPVFAKNLITSFICVFEKVDENT
RKSLFKLRSTWDEVFPSKKLYALDVRVNSVDPAWPIKPLPPAVNSIHVNPKFLKQPDETS
PARPAPAPTAPPPVAAPVDPVSSLTQEQLIRQQLLAKQKQLLELQQKKIELELEQTKAQL
AGGFVLPTSTISSLTPKAIVPQTTVIRPWIPPQGPSAEAKAPAPASTNTPSAPAPSAPAP
SAPAPSAPALSAPAPASSAPAPASSAPAPAPSAPAPAIRDPRLNRPTSKELKNEVSSSAA
ADRKHFEKHGKVERARAPRPDALDKSKSKSPSPLTKSVPSRNNKSLEEKKDPRLKKRTQE
KPENDDPREKRKREDDSKDLEDLKKKRDEASKKSKLENGSMATKEDFKLGGNARTHARKR
SRSPDSLSPKRNTGRGGSKEKDRRSPKSSCRARSSSPSPHKGQKNPRARSREDRGVSGLK
KSLNDRRKRGPDDRDSPRGHDPASKESKDAAHRWKSGWEDTKHGKEEPHKSMTPRHKAYP
SPRTAKHRLSVDANLQIPDVLNSASKKDLLRLASKRLENGEISEEEFLNLAHKIKHLFQY
QEEKQQQRGESWDQSPKTSPSSGPPAQRVPPAGLDAAQASYYQHKSKLRKTQVSQHRPLV
PSDEWPEADEGYRAGERRSKERDEPPQPMIEDYNHGKEFPPLKSLPGLRFKRRVDPRDTA
DREWISPLSERHRLDGEVKSGYDRRFPERRADPPSLNPQEPPRFERERLSPLPPPHPVAR
EQPDSSPVPRFESPNSEHSEEGPLEPGPPQNLQNLQPKSILKTRHDGPERGYNDKAPGNR
QQGWVESGPRFDSYDPEQRFDGPRFDPPSRFNSPEHFDHMTHSGPMRGFDGPSPRPQGPV
RFEPPMQRFDGPQRFNNSMGPMGFQPIPQRFEGPFDGPESRPRPGFDGPRFEHRYAPQQH
PPVRSLGPSMFDGPMAPQQGFNMGPNNMGPNNMGPNNMGPNNMGPNNMGPNNMGPSNMGP
SNMGPSNMGPSNMGPNNMGPNNMGPQHFSEPVSGPFPPAAPMFQGPNFGQPGPFTQPQGG
FYPQAPGPGLQQPMNNMNQPFMPQNTVPFPQAAPAPENHFGQVDVNDLLSKLISTGIIKG
SQPEGPASQAPGGPPVAPAAPPVVEEEEDEEEPAEDDLPDLTSFILDTMKHRYESVVTRL
YTGNQCCLCSMRFTAAQTDLYADHLDWHFRQNHAGKVAAKKITHRRWYYGLTDWVEFEEI
ADLEERAKSTFFEKENEEEVQKTQAAAKEKEFQSVRATKDQVAELCEICQEPFETYWVEE
EEDWFLKNALRVDDKNFHPACFEDYQNSSYLEATPSPHKHLEHPLSALRTDDVKVKIEDE
GGASCCVKQEVDSEPKQEVTVKEEPASS
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atggactgcgccgtgatccgtggcgcggcggcgggcggaaagcggacggagatggaggac
gcggcggcgcgggaggacgcgtgccgcgagtacgagtcgtccctggaggacctgactttc
aacagcaaaccgcacatcaacatgctcaccatcctggccgaggagaacatcgccttcgcc
agggacatcgtcggcattattgaagctcaaataagcaaggcgcctgctcaggagaagctt
cccgttttgtacttggtggattccatcgtgaagaacgtgggacgagactacctcccggtt
tttgccaaaaacctaatcacgtcctttatatgtgtgtttgagaaggtggacgagaacacc
aggaagagtctgttcaagctgcgctccacgtgggacgaggttttcccgtccaaaaagctg
tacgcgctggacgtgcgggtcaactctgtggacccggcctggcccatcaagcctctgccc
cctgcggtcaacagcatccacgtcaaccccaagttcctcaagcagcccgatgagacgtct
cctgctcgacccgctccggcccccacggcgccgcctcccgtggcggcccctgtggacccg
gtctccagcctcactcaggagcagctcatcaggcagcagcttctggccaaacagaagcag
ctgctggagcttcagcagaagaagatcgagctggagctggagcagaccaaggctcagctg
gccggagggttcgtcttgcccacgtcaaccatctcgtctttgaccccaaaagccatcgtt
ccccagacgactgtgattcgcccctggatcccgccccaagggccgagtgctgaggccaaa
gcacctgctcctgcctccacaaacaccccgtctgcgcccgctccgtctgcgcctgctccg
tctgcccccgctccgtctgcgcctgccctgtctgcgcccgctcctgcctcgtctgcgccc
gctcctgcctcgtctgcgcccgctcctgccccgtctgcgcccgctcctgccatcagagac
ccgcggctcaaccggcccacgtccaaagagctcaagaacgaggtttcgtcttctgcagcc
gccgaccggaaacacttcgagaaacacgggaaagtggagcgagccagagcgccgcgcccg
gacgctctggacaagtccaagtccaagtctccttcacctttgactaaaagtgttccaagt
agaaataataaaagtttagaggaaaagaaagatcctcgcttaaaaaaacggactcaagag
aaacctgaaaacgatgatccgagggagaaaaggaaacgagaggacgactctaaagatctg
gaggatctgaagaagaaacgggacgaggcatcgaagaagagcaaactggagaacggctcc
atggcaaccaaagaggactttaaactggggggcaacgcccggacgcacgccaggaagcgg
tcgcgctctcccgacagcctttctcccaaacggaacaccgggcgcggcggcagcaaagag
aaggaccggcgctcgcccaaaagcagctgccgcgcccggagcagctcgccatcgccgcac
aaaggccagaagaacccgcgagcgcgcagccgagaggaccgaggcgtgtccggcctgaag
aagagtctgaacgaccggcgcaaacgaggccccgacgaccgggactcgcccagaggtcac
gaccccgccagtaaagagtccaaagacgctgcgcaccggtggaagagcggctgggaggac
accaagcatgggaaggaggagcctcacaagtccatgacgccgcggcacaaggcgtatcct
tctcctcgcacggccaaacatcgcctcagcgtcgacgccaacctgcagatcccagacgtg
ctcaactccgcctccaaaaaggacctgctgcgactggcgagcaagcgtctggagaacggc
gagatctcagaagaggagttcctcaacttggcccacaagatcaagcacctgttccagtat
caggaggagaagcagcagcagcggggtgagtcctgggaccaatcccccaaaacgagccct
tcgtccgggccgccggcgcagagagtgccccctgctggcctggacgcggcgcaggcctcc
tactaccagcacaaatccaaactgaggaagacccaagtgtcacagcacaggccactcgtg
cccagcgacgagtggcccgaggcggacgagggctacagggcaggcgagcggcggagtaaa
gaacgagacgagcctccgcagcccatgatagaggactacaaccacggaaaagagttcccg
ccgctcaagtctctgcccggtctccgatttaagaggcgcgtggaccctcgggacacagcg
gaccgcgagtggatctctcctctgtcggagcgccatcgtctggacggtgaggtgaaaagc
ggatacgaccgtcgcttcccggagcgcagagcggacccgccctcgctaaacccccaggag
cctcccaggtttgagcgtgagcgcctgtcgcccctgccgccgcctcaccctgtagcccga
gagcagcccgactccagcccagtgccacgcttcgagagccccaactctgagcactctgag
gaggggccactggagcccgggcccccgcagaacctccagaacctgcagcccaaatccatc
ctcaaaaccaggcacgacgggccggagcgaggctacaacgacaaggcgccgggcaacagg
caacagggttgggttgagagcggccccaggtttgactcttatgacccggagcaacgcttc
gacggccctcgctttgacccgccctcacgcttcaacagccctgagcacttcgatcacatg
acacacagtggaccaatgagagggttcgacgggccctcgccccgccctcaggggcctgtg
cgcttcgagcctccgatgcagcggttcgacgggccacagcgcttcaacaacagcatgggc
cccatgggtttccagcccataccgcagcgctttgaggggccttttgacggcccggagtcc
agacccagacctggctttgatggtcctcgcttcgagcatcgttatgctcctcagcagcat
cctcccgtgaggtccctggggccctccatgttcgacggccccatggccccacagcagggc
ttcaacatgggccccaacaacatgggccccaacaacatgggccccaacaacatgggcccc
aacaacatgggccccaacaacatgggccccaacaacatgggccccagcaacatgggcccc
agcaacatgggccccagcaacatgggccccagcaacatgggccccaacaacatgggcccc
aacaacatgggcccgcagcacttttctgagcctgtgagtggccccttccctcccgcagcc
cccatgtttcaggggcctaactttggccagcctgggcccttcacacagcctcagggaggc
ttctatccccaggccccgggccctggcctgcagcagccgatgaacaacatgaaccagccg
tttatgcctcagaacactgtgcctttcccccaagctgctccggctccagagaatcacttt
ggtcaagtcgatgtgaacgaccttctgtctaaactcatctccaccggaatcatcaaaggg
tctcagcctgaaggccccgccagccaggccccaggaggcccccccgtggcccctgcagcg
ccccctgtggtggaggaagaggaggacgaggaggagcctgcagaggacgacctgcctgac
ctcaccagcttcatactggacaccatgaaacaccgttacgagagtgtggtgactcgtctt
tacacggggaaccagtgctgtctgtgcagcatgcgcttcacggccgctcagactgacctc
tacgctgaccatctggactggcacttcagacagaatcacgccggcaaagtggctgccaag
aagatcacacaccgacgctggtactacggcctcacggactgggtggagtttgaggagatc
gcagacctggaggaacgagccaaaagtaccttctttgagaaggagaacgaggaggaggtg
cagaagacccaggccgccgccaaagagaaggagttccagagcgtccgagccactaaggac
caagtcgcagagttgtgtgagatctgtcaggagcctttcgagacgtactgggtggaagag
gaggaggactggtttctgaagaacgctctccgtgtcgacgacaagaactttcacccggcg
tgtttcgaggactatcagaactcgtcgtacctggaggccacgccttctccacacaaacac
ctggagcacccactgagcgcgctcagaacagacgacgttaaagtgaaaattgaggacgag
ggtggagcctcgtgttgtgtcaaacaggaagtggactctgaacctaaacaggaagtgact
gtgaaagaggagcctgctagcagctag
DBGET
integrated database retrieval system
