Eucyclogobius newberryi (tidewater goby): 140377017
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Entry
140377017 CDS
T10929
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny03030
DNA replication
eny03410
Base excision repair
eny03420
Nucleotide excision repair
eny03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140377017 (rfc1)
03410 Base excision repair
140377017 (rfc1)
03420 Nucleotide excision repair
140377017 (rfc1)
03430 Mismatch repair
140377017 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eny03032
]
140377017 (rfc1)
03400 DNA repair and recombination proteins [BR:
eny03400
]
140377017 (rfc1)
DNA replication proteins [BR:
eny03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
140377017 (rfc1)
DNA repair and recombination proteins [BR:
eny03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
140377017 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
AAA
BRCT
AAA_22
PTCB-BRCT
AAA_5
RuvB_N
AAA_33
AAA_30
Rad17
AAA_17
AAA_14
AAA_18
AAA_16
SKI
RNA_helicase
TIP49
nSTAND3
AAA_7
NTPase_1
BRCT_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
140377017
NCBI-ProteinID:
XP_072318368
LinkDB
All DBs
Position
Unknown
AA seq
1153 aa
AA seq
DB search
MDIRRFFAPTSSKPAVQKPSSSDHTKIRSDEKKKTITLSSDEDVKGKKKTKVSRSGEKRK
DVGKKRKKRAVIDSDSEDEKPVKSKKSPKVKQKEEQPFKKDPVQYVSETDSDSDNFQSLK
RASKAKQNGIGNSKNKSLGTKESSKSPVKPSNPGKVVLKSPVTPKVAPPPKPKHTPTSVF
DYFGSGTIQRSDKKLVASNKRKTPIEDADDLSDEQLARQLQMDEDMELEKQVHEDEEFAR
TLAMLDEEPSAKKARKGPDDASSKNATETASGLRRRQTESLSEDVIAPSPKKSPVKSSFK
LAMMKKKDDNREMSKNKIVLSPLKKISPKKERAPSPSPEKTKIPTAGTTPISLHPSPKKT
ENTSPEDSEEKKKANVSAYRNYLNRDGPRALGSKEIPQGAENCLEGFAFVITGVLESMER
DDAKGLIERYGGKVMGNISKKTNYLVHGRDGGVSKLEKAESFGTKILDEDGLLELIRTKP
GKKSKYEIAAEAEVKASKTGTPPTQAKRTPKSQKISPSKGNSRSPQTPSPSKTSLSLAHS
ARVGLSGTPSGRGSGQTARRDLGLSSSSSPKHLSSPSMSGEGASLLWVDKYRPRSLKTVI
GQQGDQSCANKLIRWLKNWHKNHSGGSSKPAVAKFGKFGGKDDGSAFKAALLSGPPGVGK
TTTAVLVCEELGYSFVEMNASCTRSKNSLKQVVAESLNNTSIEEFYKGTSQKVSSKHVLI
MDEIDGMAGNEDRGGIQEMIGLIKTSKVPIICMCNDRNHQKIRSLANYCFDLRFQRPRLE
QIKGAMMSITFKEGIKIPPPALNEIILASNQDVRQVLHNLSMWSAKSKEMTYDQCKSDAS
NARKDMKLGPFDVCRKVFVSGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAA
GNLKSHLMLISKTADSICDGDLVDRMIRSRQNWSLLPTQAIYASVLPGELMRGYMGQFPS
FPSWLGKNSSTNKHSRIVQELSSHMSLKTYSSRQSVNLDYLHYLRNALLNPLQRFGAEGA
AQAVQLLDDYQLIREDVDSMMEISVWGGQPDLYSKLDSKVKAAFTRAYNKEVHLTPYSLQ
VVKKGRRGGGGETEPGEDIETEVRESEDEADNLKTDAMIKQKKAKATKETKKEKTEVSGK
GKGKGRGKGKVKK
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcgcttcttcgctcccacatcttctaaacccgctgtgcagaaaccatcc
tccagtgatcacactaagatcaggtcagatgagaagaagaaaacaatcaccttgtcttca
gacgaggacgtgaagggtaaaaaaaagacaaaggtttccagatcaggagagaagcgtaaa
gatgttgggaaaaaacggaagaaacgtgcagtaatagattctgactcagaagatgagaaa
cctgtgaagtcaaagaagtctcctaaagtgaaacagaaggaagagcaacctttcaaaaag
gatcctgtccagtatgtctcagaaacagattcagatagtgacaactttcagagcttgaaa
agggcatctaaagctaaacagaatggcattggaaattccaaaaataaatcgttggggacc
aaagagagcagcaaatctcccgtaaaaccttcaaatccggggaaagtggtcctaaagtct
cctgtcacccccaaagtggctccacctccaaaacctaaacacaccccaacatctgtcttt
gactactttggcagcgggactattcagcgctcagataagaagctcgtggcaagtaacaag
cgaaagactcctatcgaagatgcagacgatcttagtgatgagcaacttgccagacagcta
cagatggatgaagacatggagctagaaaagcaggtccacgaggatgaagagtttgcccga
accctcgctatgttggatgaggagccatcggctaaaaaagctcgtaaaggccctgatgac
gcgagctccaagaatgccacagaaacggcttctggtttgagacgacgacagacagaaagc
ttgtcggaggatgtcatcgctccctcaccgaagaaaagccctgtcaaatctagctttaaa
cttgcaatgatgaagaagaaggacgataatagggaaatgtcaaagaataaaatcgttcta
tcacccctcaaaaaaatctctcccaaaaaagaaagagcaccttcgccgagtcctgagaaa
acaaaaatacccacagcaggaacaactccaatttctcttcatccatctccaaagaaaacg
gagaatacaagccctgaagactctgaagagaagaagaaggccaatgtgtcagcgtacaga
aactacctcaaccgagacggtccaagggctcttggctccaaagaaatcccacagggagca
gagaattgtctggaaggttttgcttttgtaataaccggggtgctggagtccatggagagg
gacgatgccaaaggactcatcgagcgttacggtgggaaggtgatgggcaacattagcaag
aagaccaactacctggtccacgggcgagacggtggggtctcaaagctcgagaaggctgag
agttttggcactaagatcttggatgaagatggtttgcttgagctaatcaggacaaaacct
gggaagaagtcaaagtatgaaattgctgcagaggctgaggttaaagcatctaagactgga
actccacccactcaagcaaagcgcacgcccaaatcacagaagatctctccttcaaaaggc
aactccagatctcctcagactcccagcccttctaagaccagcctgtccctggcccatagt
gctcgggtgggcctgtcaggcactccctctgggagagggtctggacagacggcccggaga
gacctgggtctttcctcttcttcttctcctaaacatctttcatcaccatcaatgtcagga
gaaggggccagtttgctctgggtcgacaagtatcgcccacgatctctcaaaacagtcatc
ggtcaacaaggtgatcaaagctgtgcaaataaactaatacgctggctgaaaaactggcac
aaaaaccacagcggcggctcatccaagccggcagttgcaaagtttggtaaatttggagga
aaagacgatggctctgcatttaaagcggctctcctttctggacctccaggagtggggaag
accaccacagcagtactggtttgtgaggaactgggctacagctttgtggagatgaatgcc
agttgtactcgtagcaaaaacagcctgaagcaggttgtggcagagtcattgaataacacg
agcattgaagagttctataaaggcacatcacaaaaagtcagcagtaaacatgtcctgatt
atggatgagatcgatggcatggcgggaaatgaagaccgaggaggcatacaggaaatgatt
ggcctaatcaaaacttcaaaagtgcccataatttgcatgtgtaatgatcgcaaccatcag
aagattcgatccctcgccaactactgttttgacctgcgtttccaaagacctcgattggaa
cagataaagggggcaatgatgtccataactttcaaagaggggataaaaatccctcccccg
gctctcaacgaaatcattctagcgtcaaaccaagatgtccgacaggtgcttcacaacctg
agcatgtggtctgctaagagcaaagagatgacttacgatcagtgcaagtctgatgcaagc
aatgcccgaaaggacatgaaactgggtccatttgatgtttgcagaaaagtgtttgtctcc
ggggaggagacggctcatatgagcttgatcgacaagtctgacctcttcttccatgactac
tcactagcaccactctttgttcaggaaaactacctccatgttcgtcctgcagcggcagct
ggtaatctcaaatctcacttgatgttgatcagtaaaacagctgactctatctgtgacgga
gacctggtggacaggatgattcgctctcggcagaattggtcactattgcctacacaggcc
atttatgccagtgtgttacctggagaacttatgcggggctacatgggtcagttcccctct
tttcccagctggcttggcaaaaactcgtccaccaataaacattcccgcattgtgcaggag
ctttcatctcacatgagcttaaagacgtacagcagcagacagtccgtgaacctggactac
cttcactacttgcgaaatgcccttttgaaccctcttcagaggttcggggctgagggtgca
gcacaggctgtgcagctcctggacgactaccagctcatcagagaagacgtggacagcatg
atggaaatcagtgtctggggcggtcagcctgatctctactccaaacttgactcaaaggtg
aaggcggccttcacacgtgcatacaacaaagaggtccacctcacaccgtactctctacaa
gtggtcaagaaaggccggcgcggcggcggtggcgaaacagagccaggggaagacatagaa
acagaagttcgagagtcagaagatgaggcagataacctcaaaacagacgccatgatcaaa
caaaagaaggccaaagccacaaaggaaactaaaaaagagaagactgaagtgtctggtaaa
ggcaaaggcaaaggaagaggaaagggcaaggttaaaaaataa
DBGET
integrated database retrieval system
