Eucyclogobius newberryi (tidewater goby): 140377576
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Entry
140377576 CDS
T10929
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140377576 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eny03019
]
140377576 (patl1)
Messenger RNA biogenesis [BR:
eny03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140377576 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
140377576 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
140377576
NCBI-ProteinID:
XP_072319131
LinkDB
All DBs
Position
Unknown
AA seq
827 aa
AA seq
DB search
MFRFQSLDDDCTLEEEDDGLIEEEDEIDQFNDDTFGAGAIEDDGWQEEHKRLAGLDGLGG
VVPGSGSGPGSGPGSGPGSGLEPGSGSGPGSGSGPGSGSGLGALGRAGDPPPLGPPASSL
PSMNFTSSSGFPRPDAEERGGGDGDLAESLARFILDADPAIAGVGAAERPNPALSGLQGL
DRSRVPNQLPPHPHLPPGPSTSGLAPGPASLLSFQQQQQQHLMRRGASPMGQINSHSIWE
STMGFGPVSLTPGLCTHMEDSPLMSIIKEVGLPKRPQNRSDEARDLSERVPPPRSSSPVI
GSPPVRAVPIGTPPKQPMSHLLNHQIHHPTAVHIRAPVPHRYHPPPFPDRLSPNTLLNIA
NSPLCRGPFPPGVLSQIQRAQMLNSQVAGFPRGGPPPMMPGGGFRPFFGGPPPPHGHRMG
LPQPHGPPNHALPIRHNTTHLHPQHRRMLTQRLQSRGGCRPGLDRRSRDPYSNLMTQKEK
EWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQEKERDSSKKEHTTKLITPQVAKVEHT
YRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYSL
LLEVQDFEKRFVLTPEEEREALLERHKTNTVQLCNSLREKEWEDKVSDEQLVMIMSVRKG
KRLISRLLPLLPAAQATAVLMATARNLPALAKKDKQDQVLCWLVEPVSAVVQSMSSSALT
DLLQELQSNEGQLASVLHNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTR
ELLSVPSASLSPPLFTPPNLLSLFSRYVDRQRLELLQDKLQISTLSR
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggacgacgactgtacgctggaggaggaggatgacgggctg
attgaggaagaagacgagatcgatcagttcaacgatgacacttttggagcaggcgcaatt
gaagatgacggctggcaggaggagcacaaacgtctggcagggctggatggactgggaggt
gttgtaccagggtctggatcaggaccagggtctggtccagggtctggcccagggtctgga
ttagaaccagggtctggatcaggaccagggtctggatcaggaccagggtctggatcaggg
ctcggggctctgggacgagcaggagaccccccaccactcgggcctccagcgtcttctttg
ccatcaatgaatttcacgtcttcctctggttttcctcgtccagatgcagaggagcggggc
ggaggcgacggtgacctggcagagtcgttagcccggttcatcctggacgcagaccctgct
atcgctggtgtgggcgcggcggaaagaccaaaccccgctctgtctggtctacagggttta
gaccgatccagagtccccaaccagctccccccgcacccccatttgcccccgggaccctcc
acgtccggtctggctcctggtcctgcatcgctgctcagcttccaacagcagcaacagcag
catttgatgcgccgaggagcgtctcccatgggacagattaactctcacagtatatgggag
agcacaatggggtttggcccggtcagtctcacccctgggctgtgcacacacatggaggac
agtccgctcatgtccatcatcaaagaggtgggtttgcctaaaagacctcagaaccgaagc
gacgaagccagagacctgtcggagagggtcccgccccctcggtcatcctcgcctgtgatt
ggctctcctcctgtgagggcggtgcctatcggaactccacccaaacaaccaatgagccat
ttgctcaaccatcagatccatcaccccacagcggtgcacatccgggccccggtgccacac
agatatcatcctcctcctttccccgatcgcctttctccaaacacactcctcaacatagca
aactctcctctgtgtcgaggtccgtttcctcctggagttttgtctcagatccagagggct
caaatgctcaactctcaggtggcaggcttccctcgcggtggccctcctcccatgatgccc
ggcggtgggttcaggccgttcttcggtggtcctcctcctccacacggacacaggatggga
ctgccacaaccccacggaccccccaaccacgccctgcccatccgacataacaccacccac
ctgcacccgcagcaccggagaatgctcacgcagcggctgcagagccgaggagggtgtcgg
cctggactggaccgccgcagcagagacccctacagtaacctgatgacccagaaggagaag
gaatgggtcaccaagatccagatgatgcagctccagagcactgacccatatctggacgac
tactactatcagaactactacgaaaagatggagaagcgtcaggaaaaggagcgagacagc
agcaaaaaggagcacaccaccaaactcatcactccacaagtggccaaggtggagcacaca
tacaggccggtccagttcgcaggatctctgggtaaactcaccgtctccagcgtcaacaac
ccccgaaagatgatcgacgccgtggtgacgactcgctccgatgacgaggaaaaacgtgag
aagcaggtttggaataagaggcgtcagatcctctacacagtggaaaagatgtacagtttg
ttgctggaggtgcaggactttgagaagcgtttcgtcctgacgcctgaagaggagcgagag
gcgctgctcgaacgacacaaaactaacacggttcagctctgcaactctctgcgggagaaa
gagtgggaggacaaggtgagtgacgagcagctggtgatgatcatgtccgtgaggaaaggg
aagcggctaatatccaggctcctccccctcctgcccgctgcccaggccactgccgttctc
atggcgaccgcccgaaacctgcccgcgctcgccaagaaggacaaacaggaccaggtgctg
tgttggttggtagaacccgtgtctgctgtggtccagtccatgtcgagctccgccctcacg
gatttactccaggagctccagagcaacgaaggacagctagcatcagtgctacacaacaag
tttggtgtgacgctgctgtatctgatcctgagtgaaggagagcggatgcagagctcggac
ccaaactgtcagctcatggacgacaaccgatggactgagctggtcttctctgtgacgcgg
gagctgctttccgtcccgtccgcgtctctttctcctccgttattcacgcctccaaacctc
ctctcgctcttctctcgctacgtcgaccggcaaagactggagttgttacaggacaagcta
cagatctccacgttgtccaggtag
DBGET
integrated database retrieval system
