Enterobacter sp. T2: G0034_08500
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Entry
G0034_08500 CDS
T07956
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
enz
Enterobacter sp. T2
Pathway
enz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
enz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G0034_08500 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
enz03400
]
G0034_08500 (mfd)
Enzymes [BR:
enz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G0034_08500 (mfd)
DNA repair and recombination proteins [BR:
enz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G0034_08500 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
HTH_53
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QIB81737
LinkDB
All DBs
Position
complement(1792321..1795767)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVVLVAPDMQNALRLHDEIR
QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALREQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFDVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEALWLRTDELNAELKHWPRIQLKTDSLADKAANTNLAFRTLPD
LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRIQRLSDAAG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEDNA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPMWLIGLLQKQPQYFRLDGPTRLKFTQELADRKTRMDWVRNFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgttattccttgcctgtcaaagcgggcgaccagcgccagttgggt
gaacttacgggcgcggcgtgcgccacgctggtggcagaaattgctgagcgacaccccggc
ccggtggtgcttgttgccccggatatgcaaaatgccctgcgcctgcacgacgaaatccgc
cagttcaccgatagcctggtgttcagcctggccgactgggaaacgctgccgtatgacagc
ttctctccgcatcaggagatcatctcctcgcgcctgtcgacgctctaccagttgccgacc
atgcagcgcggtgtgctgattgtgccggtaaatacccttatgcagcgcgtctgtccgcac
agctatctgcatggtcatgcgctggtgatgaaaaaaggccagcgcctgtcccgtgatgcc
ctccgcgagcagcttgacggtgccggctatcgccatgtcgatcaggtgatggagcacggg
gaatacgcaacccgtggcgcactgcttgacctgtatcctatgggcagcgaccagccgtat
cgtctcgatttcttcgatgatgaaatcgacagcctgcgcgtgttcgacgccgacacccag
cgcacgctggaggaagtagagtccattaacttactgcccgcgcatgaattcccgacggac
aaaactgccatcgaactgttccgcagccagtggcgcgataagttcgacgtgaagcgtgat
gccgagcacatctatcagcaggtcagcaaaggcacgctcccggccgggatcgaatactgg
cagccgttgttctttaacgagccgctgcctgctctgttcagctacttcccggcaaatacg
ctgattgtgaacaccggcgatatcgacgccagcgccagccgtttcgaaagcgaaacccgc
gcccgcttcgaaaaccggggcgttgacccgatgcgtccgctgctgccgccagaagcgctg
tggctgcgtaccgacgaactcaatgcggagctgaagcactggccgaggatccagctcaaa
accgattcgcttgccgataaggccgccaacaccaacctcgccttccggacgctgccggac
ctggccgtacaggcgcagcagaaatcgccgctggataatctgcgcaagttccttgagtcc
tttaccggcccggtggtgttctccgttgagagtgaaggccgccgcgaagcactcggcgag
ctgctggggcgaataaaagttgcgccgaaacgcattcagcgcctgagcgacgcggccgga
aacggccgttatctgatgattggtgccgccgaacacgggtttattgatacgctcaacaac
ctggcgctgatttgcgaaagcgatctgctgggtgagcgcgtcgcgcggcgccgtcaggac
agccgtcgaaccattaacccggacacgctgatccgtaacctggccgaactgcatccgggc
cagcccattgttcacctggaacatggcgttgggcgctatcagggaatgaccacgctggaa
gccggcggcatcaaaggtgaatatctgatgctgacctacgccaacgacgccaaactgtat
gttccggtgtcgtccctgcatctgatcagccgatacgcgggtggcgcggaggataacgcc
ccgctgcacaaactgggcggcgatgcctgggctcgcgcgcgccagaaagcggcggagaaa
gtacgcgacgtggcggccgagctgctggatatctacgcccagcgcgcggccaaagagggc
ttcgcctttaagcatgataaagagcagtaccagctgttctgcgacagcttcccgtttgaa
accacgccggaccaggcacaggccatcaacgccgtactgagcgacatgtgccagccgctg
gcgatggaccgcttagtctgcggcgacgtcggcttcggcaaaaccgaagtggcgatgcgc
gccgccttcctggcggttgaaaacaacaagcaggtggcggtgctggtgccgaccaccctg
ctcgcccagcagcacttcgacaacttccgcgaccgtttcgccaactggccggtgcgcatt
gagatgctgtcacgttttcgcagcgccaaagagcagacgcagatcctcgaacaggcaagc
gaaggcaaaatcgatattctgataggtacgcacaagctgctgcaaagcgacgtgaagtgg
aaagatctggggctgctgatcgtcgatgaagagcaccgcttcggggtgcgccataaagaa
cgcatcaaagcgatgcgcgccgacgtcgatattctgaccctgaccgcaacgccaattccg
cgtacgctgaacatggcgatgagcggcatgcgcgatctgtcgattatcgccacaccaccg
gcgcgtcgtctggcggtgaaaacctttgtccgcgagtacgataatctggtggtacgcgag
gcgatcctgcgtgaggtactgcgcgggggccaggtttattatctttataacgacgttgaa
aatatccagaaagccgcggacaggctggccgaactggtaccggaagcgcgtattgccatc
ggccacgggcagatgcgcgagcgggagctggagcgggtgatgaacgacttccaccaccag
cgctttaacgtactggtgtgtaccaccatcattgagaccggcattgatatcccgacggcg
aataccatcattattgagcgtgcggatcactttggtctggcgcagcttcatcagctgcgc
ggtcgcgtcggccgttcgcatcatcaggcttacgcctggctgttgaccccgcatccgaaa
gcgatgacaaccgacgcgcaaaagcgtctggaagccatcgcctcgctggaagacctcggt
gcaggctttgcgctggccacgcacgatcttgagatccgtggtgccggcgaactgctgggc
gaggatcagagcggctccatggaaaccatcggcttctcgctatatatggagctgctggaa
aacgcggttgatgccctgaaggccggacgcgagccgtcgctggaagatctcaccagccag
cagaccgaggtcgagttgcgtatgccgtccctgctgccggatgatttcattcctgatgtg
aatacccgcctgtcattctacaaacgcattgccagcgcgaagaatgaaaatgagctggaa
gagatcaaagtggaactgattgaccgctttggcctgctgcccgatgcggcgagaaatctg
ctggatatcgcgcggctgcgccagcaggcgcagaagctggggatccgcaaacttgaaggt
aatgaaaaaggcggcgtcattgaattcgccgagaagaaccacgtcaacccgatgtggctg
attggcctgctgcaaaaacagccgcagtatttccgcctggatgggccaacccgtctgaaa
tttacccaggagctggcggatcgcaaaacccgtatggactgggtgcgtaactttatgcgg
cagctcgaagagaacgcggtcgcgtaa
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