Emys orbicularis (European pond turtle): 135874281
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Entry
135874281 CDS
T11511
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03015
mRNA surveillance pathway
eob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135874281 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
135874281 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eob03019
]
135874281 (PABPC1)
03041 Spliceosome [BR:
eob03041
]
135874281 (PABPC1)
Messenger RNA biogenesis [BR:
eob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135874281 (PABPC1)
mRNA cycle factors
Stress granule specific factors
135874281 (PABPC1)
Spliceosome [BR:
eob03041
]
Complex C
Other components
Complex C specific factors
135874281 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
135874281
NCBI-ProteinID:
XP_065255143
LinkDB
All DBs
Position
2:38667513..38689531
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAALPPTQNRA
AYYPTSQLAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctccctgtacgtgggggacctgcacccc
gacgtcaccgaggccatgctctacgagaagttcagccccgccgggcccatcctctccatc
cgcgtctgccgggacatgatcacccgcaggtctctgggctacgcctatgtcaacttccag
caacccgccgacgctgaacgagctttggataccatgaacttcgatgtcattaaaggaaag
ccagtgcgcatcatgtggtctcagcgtgatccatctctacgcaaaagtggtgttggaaac
atcttcatcaagaacttggacaaatcaattgataataaagctttgtatgatacattttct
gcttttggaaacatcctctcctgtaaggtagtatgtgatgaaaatgggtccaagggttat
ggatttgtacattttgagacacaggaagcagcagaaagagctattgaaaaaatgaacggt
atgctgcttaatgaccgcaaagtatttgttggaaggtttaaatcccgtaaagaacgagaa
gcagaacttggagctagagcaaaggagttcaccaatgtttacatcaagaattttggagaa
gacatggatgatgaaagacttaaggaactctttggcaagtttggccctgccttaagtgtg
aaagttatgaccgatgagagtggaaaatccaaaggctttggctttgttagctttgaaaga
catgaagatgcccagaaagctgtggatgagatgaatggaaaggagctcaatggaaagcaa
atttatgttggtcgggctcagaaaaaagtggaaagacaaacagagctcaagcgcaaattc
gaacaaatgaagcaggacaggatcaccagataccagggagtaaacctttatgtgaaaaat
cttgatgatgggattgatgatgaacgtctaagaaaagaattctccccatttggtacaatc
actagtgcaaaggtcatgatggaaggtggccgcagcaaagggtttgggtttgtatgcttt
tcttcaccagaagaagcaaccaaagctgtcacagaaatgaatggtagaattgtggccact
aaaccattatatgtagctctagcccaacgcaaagaagagcgccaggctcacctcaccaac
caatatatgcagagaatggcaagcgtgagagcagtacctaatcctgtaatcaacccctac
caaccagcacctccttcaggttacttcatggcagctctcccaccgactcagaaccgtgct
gcatattatccaactagccaacttgctcaactcagaccaagtcctcgctggactgctcag
ggtgctagacctcatccattccagaacatgcctggtgctatccgcccagcagcacccaga
ccaccatttagtaccatgaggccagcttcttcacaggttccacgagtcatgtcaacacaa
cgtgttgctaatacatcaacacagacaatgggtccacgtcctgcagcagctgctgctgcg
gccactcctgctgtacgcaccgttccacagtacaagtatgctgcaggtgttcgtaatcct
caacaacatcttaacacacagccacaggttgctatgcagcagccagctgtccatgtgcaa
ggtcaggaacccttgactgcttccatgttggcttctgcccctccacaagaacaaaagcag
atgttaggtgaacggctgtttccccttattcaagctatgcaccctactctggcgggtaaa
atcactggtatgttgttggagattgacaactctgaactccttcatatgcttgagtctcct
gagtctcttcgttcgaaggttgatgaagctgtagctgtactacaagcccaccaagctaaa
gaggctgctcagaaagcagttaacaatcctactggggttccaagtgtttaa
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