Emys orbicularis (European pond turtle): 135875796
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Entry
135875796 CDS
T11511
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135875796 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eob03021
]
135875796 (CPSF3)
03019 Messenger RNA biogenesis [BR:
eob03019
]
135875796 (CPSF3)
Transcription machinery [BR:
eob03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135875796 (CPSF3)
Messenger RNA biogenesis [BR:
eob03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
135875796 (CPSF3)
U7-dependent histone pre-mRNA processing factors
135875796 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
135875796
NCBI-ProteinID:
XP_065256883
LinkDB
All DBs
Position
3:complement(33810002..33865449)
Genome browser
AA seq
691 aa
AA seq
DB search
MSAKRKAEAMIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRG
GRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADK
KPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVTQTQAIPYSGPFNLLYYQLQKL
TGDVEEIEIQQKPALKVFRNITVIQEPGMVVLEWVANPANDMYADTVTTVILEVQSNPKI
QKAAVHKISKKVDMDVFSKRMEIMLQDMFGEDCVSAKDGSVLSVTVDGKTANISLDTRTA
ECEPGNEDDESLREMVELAAQRLYDALSPVR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgaagagaaaagccgaggccatgatcccggccgaggagagcgaccagctgttg
atccggcccctaggtgctgggcaagaagtaggaagatcatgcattattctggagtttaaa
ggaagaaaaataatgcttgattgtggaattcaccctggcctagaaggaatggatgcccta
ccttacattgacttgatagatcctgctgagattgatctcctcttaatcagtcatttccat
ttggatcactgtggggctttaccatggtttctgcagaagaccagtttcaaaggaagaaca
tttatgactcatgctacaaaagctatttacaggtggctcctttcagattacgtcaaggtt
agcaatatttcagcagatgacatgctgtacacggagacagatctggaagaaagcatggac
aaaattgaaaccatcaactttcatgaagtaaaagaggtggcaggaatcaagttctggtgt
taccacgcgggccacgtcctgggagcagccatgtttatgattgaaatagctggtgtgaag
cttttatatacaggtgatttctcaagacaggaagacagacacttgatggcagctgagatt
cctaatattaaacctgatattcttatcattgaatccacctatggtacccatattcatgaa
aaaagggaagagcgagaagcaagattctgtaacactgttcatgatattgtaaacagagga
ggtagaggtcttattcccgtctttgccttgggtcgcgctcaagagctgcttttgatctta
gatgaatactggcagaatcaccctgaactccatgacatcccaatatactatgcctcctct
ttggcaaagaaatgcatggcagtgtatcagacatatgtaaatgctatgaatgacaagatc
cgcaagcaaatcaacatcaacaatccatttgttttcaaacacattagtaatctgaagagt
atggatcactttgatgacattggccccagtgtcgttatggcttccccaggtatgatgcag
agtggcttatccagagaattgtttgagagctggtgtactgataagagaaatggagtaata
atagcagggtactgtgttgaaggaacacttgccaagcacataatgtctgaacctgaagag
atcacaactatgtcagggcagaagctcccactgaagatgtctgtagactacatttctttc
tctgctcacacggattaccaacaaacgagcgagtttatcagggcactgaaacctccgcat
gtgattttagtgcatggtgagcagaatgaaatggccagattgaaagcagcattgatacga
gaatatgaggataatgatgaagttcacatagaagttcacaatcctaggaatactgaggct
gtgacattaaacttcagaggagagaaacttgccaaggtgatggggtttttagcagataaa
aagccagagcaaggacagcgcgtttcagggatcctggttaaaagaaactttaactatcac
atcctttctccatgtgacctctcaaattacactgatttggctatgagcactgtaacacag
acacaagccattccgtattctggccctttcaatctgctttattaccagctacagaaactg
acaggtgatgtagaggaaattgaaatccagcaaaagccagccttgaaggttttcagaaat
attactgtgatccaggaacctggcatggtggtacttgagtgggtggcaaatcctgcaaat
gatatgtatgcagacactgtaacaacagtgatcctggaagttcagtcaaatcccaaaata
cagaaagctgcagtgcataagatttccaaaaaagtagatatggatgtatttagcaaaagg
atggagatcatgcttcaggacatgtttggagaggactgtgttagtgcaaaagatggctct
gttctaagtgtcacagtggatggaaagactgcaaatatttcattggacacacggactgct
gaatgtgagccaggaaatgaagatgatgaatcccttcgggaaatggtggagttggctgca
cagagactctatgatgccctcagcccagtccgttga
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