Emys orbicularis (European pond turtle): 135877646
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Entry
135877646 CDS
T11511
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135877646 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eob03019
]
135877646 (CLP1)
Enzymes [BR:
eob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
135877646 (CLP1)
Messenger RNA biogenesis [BR:
eob03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
135877646 (CLP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
TniB
MMR_HSR1
AAA_18
ATP_bind_1
AAA_16
AAA_22
CbiA
nSTAND3
Motif
Other DBs
NCBI-GeneID:
135877646
NCBI-ProteinID:
XP_065259241
LinkDB
All DBs
Position
4:151120640..151125463
Genome browser
AA seq
463 aa
AA seq
DB search
MPSRTSGPGAGCARGLGSPGWLVYRQAAAAAAGLYGIEMAEEAGDEKKQVAKFELERETE
LRFEVEASQTVQLELLAGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCTVQLSGRTEVA
YISKDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVVGPTDVGKSTVCRLLLNYAVRLG
RRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNK
ITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYHALVHAASAFEVDVVVVLDQERL
YNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDDRIREYFYGFRGCFYPHAFDVKFS
DVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVSTADGSEENISETS
VAGFIVVTGVDVDRQVFTVLSPAPRPLPKNFLLIMDIRFMDLK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgccttcccgcacttccggccccggggccggatgtgcgcgtggccttgggtctcctggt
tggttggtttatcgccaggcagcggcggcggcggcgggcctgtatgggatagagatggca
gaggaggccggggatgagaagaagcaggtggcaaagtttgagctggagcgggagacggag
cttcgctttgaggtggaggcctcgcagactgtccagctggagctgctggcaggcatggcg
gagattttcggcaccgagctgacccgtaacaagaagttcactttcgatgctggtgccaag
gtggccgtgttcacgtggcatggctgcacagtgcagctgagcggccgcactgaagtggct
tacatatcgaaggacacgcccatgctgctctacctcaacacccacacagccctggagcag
atgcggcggcaggcagagcgcgaggatgagcgggggccccgggtcatggtggtggggcct
acggatgtgggtaagtcgacagtgtgccggctgctgctgaactatgctgtgcggctgggg
cgccgacccaccttcgtggagctggacgtgggccaaggctcggtctccatccctggcacc
atgggggcactgtatatcgagcggcctgctgatgtagaggagggcttctctgtccaggcc
cccttggtctatcactttggctccaccactccaggcaccaacatcaaactctataacaag
atcacatctcgcttggctgacgtctttaaccagcgctgcgaagtgaaccgccgggcttca
gtcagtggctgcgtcatcaacacgtgcggctgggtgaagggctccgggtaccacgccctg
gtgcatgctgcctcagcctttgaggtggatgtggtggtagtgctggaccaggagcgccta
tacaatgagctgaagcgggatctgccccattttgtgcgcacagtgctgctccccaaatcg
ggtggggtggtagagcgctccaaagacttccggagggagtgccgggatgaccgcatccgt
gagtacttttacggcttccgtggctgcttctacccccacgccttcgacgtcaaattctct
gatgtcaagatctacaaggtgggggctcccaccatccctgactcatgcctgcccctgggc
atgtcgcaggaggataaccagctcaagcttgtgccagtgacaccaggccgtgacatggtg
caccacctgctgagcgtcagcactgctgatggcagtgaggagaacatctccgagaccagc
gtggctggcttcatcgtcgtcactggggtggacgtagatcgccaggtcttcacagtgcta
tcaccagcacctcgcccactgcccaagaacttcctgctgatcatggacattcgcttcatg
gaccttaagtag
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integrated database retrieval system
