Emys orbicularis (European pond turtle): 135878686
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Entry
135878686 CDS
T11511
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03420
Nucleotide excision repair
eob04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
135878686 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
135878686 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
eob04121
]
135878686 (DDB1)
03400 DNA repair and recombination proteins [BR:
eob03400
]
135878686 (DDB1)
Ubiquitin system [BR:
eob04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
135878686 (DDB1)
DNA repair and recombination proteins [BR:
eob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
135878686 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
135878686 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
135878686
NCBI-ProteinID:
XP_065260489
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All DBs
Position
4:124133241..124153685
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSSEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFHPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVSLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLSVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVT
QEPKALVSEWKEPKGKNISVASCNSSQVVVAVGRALYYLEIQPQELRQISCTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYVKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtggtgacggcgcagaagccaacggccgtgaacggctgcgtcacc
gggcacttcacgtcctcggaggacctgaacctgctgatagcgaagaacacccgccttgag
atctatgtggtcacggcagaggggctgcggcccgtcaaggaggtgggcatgtatggcaag
atcgcagtcatggagcttttccacccaaagggggagagcaaggatctgctgttcatcctg
acagccaaatataatgcctgtatccttgagtacaagcaaagtggtgagagcattgatatc
atcacccgagcccatggcaatgtgcaggatcgcattggtcggccctcagagacgggtata
attggcataattgacccagagtgtcggatgattggattgcggctctatgatggcctcttc
aaggtcattcctctggaccgggacaacaaggagttaaaggcctttaacatccgcctggag
gagctgcaggtcatcgatgtcaaattcctctatggctgccaggctcctaccatctgcttt
gtttaccaggatccccagggccgccatgtcaaaacatacgaggtatccctgcgagagaag
gaattcaacaagggtccctggaaacaggagaatgtagaggccgaagcgtccatggtaatt
gcagtgcctgagccctttggaggagctatcatcattgggcaagagtccatcacctaccac
aatggcgataaatatctggctatagccccacccatcataaagcaaagtacaatcgtgtgc
cacaaccgtgtggatcccaatgggtcccgttacctcctgggggatatggagggccgtctc
ttcatgctgcttctggagaaggaagagcagatggatggcacggtcagcctgaaggacctg
cgtgtggagctgcttggagagacatccattgcagagtgcctgacctacctagataatggt
gttgtctttgtcggctctcggcttggggactcccaacttgtgaagctcagtgtggacagc
aatgaacaaggctcctatgtagtggccatggaaaccttcaccaacctgggccccatcgtg
gacatgtgtgtggtggatctggagcgacagggtcaagggcagctggtcacgtgctctggc
gcctttaaggagggctccctgaggatcatccggaacgggattgggattcacgaacacgcc
agcatcgacctgccagggattaaaggcctatggcccctgaggtcagattcacatcgtgaa
accgacaacaccttggtgctgtcctttgtaggccagaccagggttctgatgttaaacggg
gaggaagtggaggaaactgagttgacaggattcgtggatgatcagcaaaccttcttctgt
ggcaacgtggcccatcagcaactgatccagatcacctctgcctccgtgcggctggtcact
caggagcccaaagccctcgtgagtgaatggaaagagcccaaggggaagaacatcagcgtg
gcttcctgtaacagcagccaggtggtggtggctgtggggcgagcactctactacctggag
atccagccccaggagctcaggcaaataagctgcacagagatggagcatgaggtggcctgc
ctggacatcaccccactgggggactctaatggcatgtcccctctgtgtgccatcggcctc
tggactgacatttcagcccgcatcctaaagctgccctcgtttgagctgctgcacaaggag
atgctgggaggagagatcattccccgctccattctgatgaccacctttgagagcagccac
tatctcctctgcgccttgggagatggggctctcttctactttgggctcagcattgagaca
ggtttgctgagcgaccgtaagaaagtgacgctgggcacccagcccactgtcctaaggaca
ttccgttcactctccaccaccaatgtctttgcctgctctgaccgccccactgtgatctac
agcagtaaccacaaactggtcttctccaatgtcaacctcaaggaggtgaactacatgtgt
cccctcaactcggatggctaccctgacagtctggcattggccaacaacagcaccctgaca
atcggcaccatcgacgagatccagaaactgcacatccgcacagttcccctctacgagtcg
cccaggaagatctgctaccaggaggtttctcagtgctttggcgtgctttcgagtcgcatt
gaggtgcaggatgccagtgggggcaccactgcactgagacccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagctgttttccagcagcaccgctccgcacgagacg
tccttcggagaggaggtggaggtgcacaatctactcatcatagaccagcacacctttgaa
gtgctccacgctcaccagttcctgcagaatgaatacgccctaagcctggtctcctgcaag
ctgggcaaagaccccaacacgtacttcatcgtgggcacggccatggtgtatcctgaggag
gctgagcccaaacagggtcgcattgtagtcttccactactcagatgggaaactgcagagt
ctggccgagaaggaagtgaaaggggctgtgtattccatggtggagttcaacggcaagctc
ctagccagcattaacagcacggtgcgtctgtatgagtggacggcagagaaggagctgcgc
acagagtgtaaccattataataacatcatggctctctacgtaaagaccaagggcgacttc
atcctggttggagatctgatgcgctctgtcctgcttctcgcctacaagcccatggagggt
aactttgaggagattgctcgagacttcaacccaaactggatgagcgctgtggagatcttg
gacgatgacaacttcctgggagcagagaatgcttttaacctgtttgtgtgccagaaggac
agcgctgccacgaccgatgaggagcgccagcacttgcaggaagtggggctgttccacctg
ggggagtttgtcaacgtgttctgccatggctccctggtcatgcagaacctgggcgagacg
tccacaccaacgcagggctcggtgctcttcggcacggtcaacggaatgattgggctggtg
acgtcactgtcggaaagctggtacaacctcctgctggatatgcagaacagactcaataaa
gtcatcaagagtgtgggcaagattgagcactccttctggagatcatttcacactgagcgc
aagacggagccagccacagggttcattgatggtgacttgattgaaagcttcctggacatc
agccggcccaaaatgcaggaggtggtagcaaacctacagattgacgatggcagtggcatg
aagagagaggccaccgtggacgacctgataaagatcgtggaggagctgacccggatccat
taa
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