KEGG   Emys orbicularis (European pond turtle): 135878729
Entry
135878729         CDS       T11511                                 
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
  KO
K20183  Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
eob  Emys orbicularis (European pond turtle)
Pathway
eob04140  Autophagy - animal
eob04142  Lysosome biogenesis
eob04148  Efferocytosis
eob05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:eob00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    135878729 (VPS39)
   04140 Autophagy - animal
    135878729 (VPS39)
   04148 Efferocytosis
    135878729 (VPS39)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    135878729 (VPS39)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:eob04131]
    135878729 (VPS39)
Membrane trafficking [BR:eob04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    135878729 (VPS39)
SSDB
Motif
Pfam: Vps39_1 CNH zf-Vps39_C TPR_Vps41 Clathrin VPS18_solenoid_2nd Beta-prop_RIG_2nd SAM_CEP-1_C LIF1_N DUF4145 Lgl_C EcoR124_C
Other DBs
NCBI-GeneID: 135878729
NCBI-ProteinID: XP_065260534
LinkDB
Position
4:complement(64991228..65036960)
AA seq 875 aa
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDIGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHSDTGE
EVLRMCVAVRKKLQLYFWKDREFYELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKGALNWTDIPIVME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIVYVASNHFVWRLLPVSI
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLVFLYSTWVLRDFPDDGLKIFTEDLPEVESLPRDKVLNFLIESFKSLAIPYLEHIIHVW
EEMSSEFHNCLIQLYCEKVQGLMKEYLSSFPADKIPVPAGEEEGDLGEYRRKLLCFLEIS
SCYEPSRLISDFPFDGLLEERALLLGRMGKHEQALIIYVHILKDTKMAEMYCHKHYDRSK
DGNKDVYLSLLRMYLSPPSVHCLGPIKMELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CTVCKKKIGNSAFARYPNAVVVHYFCSKEVSTADT
NT seq 2628 nt   +upstreamnt  +downstreamnt
atgcacgacgccttcgagccggtgccgatcctggagaagctgccgctgcagatagactgt
ctggcggcctgggaggaatggctgctcgttggcaccaaacaaggacaccttcttctttac
aggatcaggaaggatataggttgcaacagatttgaagtgacactagagaaatccaacaag
aacttctcaaaaaagattcagcagattcatgttgtttcccagtttaaaattctggtcagt
ttgttagaaaataacatttatgtccacgacctgttgacatttcaacaaatcaccacagtc
tctaaggcaaaaggtgcatctctgttcacctgtgacttacagcactctgatacaggggag
gaggtgctgaggatgtgcgtggcagtgcggaagaagctacagctgtatttctggaaggac
agggagttctatgagctacagggggacttcagtgtgccggatgtgcccaagtctatggca
tggtgtgaaaattctatctgtgtaggtttcaagagagactattatctgataagggtggat
ggaaaagggtccatcaaagaactgttccccacagggaagcagcttgaaccattggtggct
cccttagcagatggaaaagttgcagttggtcaagatgatctaacggtagtacttaacgaa
gaagggatttgtactcagaaaggtgccttgaattggacagacattcccatagttatggaa
catcagcctccatacatcattgcggtgctaccaaggtatgtggagattcgcacttttgaa
ccccggctgctggtgcagagtattgagctgcaaagaccacgcttcatcacctccggaggt
acgaatattgtgtatgtggccagcaatcattttgtttggcgtctccttccagtctccata
gcaacccagatccagcagcttctccaagacaagcagtttgaattggctctgcagttggcg
gaaatgaaagatgattcagatagtgaaaagcaacaacagattcatcacattaagaacctt
tatgcctttaacctcttctgccagaagcgcttcgatgaatccatgcaggtttttgccaag
cttggtacagatcccactcatgtgatgggtctgtatcctgacttgctgcccactgattac
aggaaacagttgcagtatcctaatcctctgcctgtgctctctggggctgagctggagaaa
gcacacttagcactcatagactatctaactcagaaaagaagtcagctggtaaagaagtta
aatgactcagaccaccagtccagcacctcacccctcatggaaggaacacccaccatcaaa
tccaaaaagaagttgctccaaatcattgacaccaccttgctcaagtgttacctacataca
aatgtagctctggtagcaccgttgctacgtctggagaacaatcactgccacatagaagag
agtgagcatgtactgaagaaggcacacaagtacagtgagctgataatactgtatgagaag
aaagggctgcatgaaaaagctctgcaggtgctagtggatcaatcaaagaaagccaactcg
cctttgaagggccatgaaaggacagtgcagtatctacagcatttgggcacagaaaacttg
cacttggtgttcctctattccacatgggtgctcagagactttcctgatgatggtttgaag
atatttacggaagaccttcctgaagtagaatccttgcctcgagacaaagtactcaacttc
ttgatagaaagctttaaaagcctggctatcccttacctggaacacatcatccatgtttgg
gaggagatgagctcagaattccacaattgtctgatccagctgtactgtgagaaggtgcag
ggattaatgaaggaatatctcagctccttccctgcagataaaattccagtgcctgctgga
gaggaggaaggagacctgggggagtatcggagaaagctgctctgttttcttgagatttct
agctgctatgaacctagtcgtctcatcagtgatttcccctttgatggcctcctagaagaa
cgtgccctgctgttgggtcgtatggggaagcatgaacaagccctcattatttatgtccac
attctgaaggataccaaaatggctgaaatgtactgccataaacactatgacagaagcaaa
gatggcaacaaagatgtgtatctgtctctgctccggatgtatctatccccacctagtgtt
cattgcctggggccaatcaagatggaactgttggagcctcaagccaatctccaggctgcc
ctgcaggttttagaattgcaccacagcaaattagatactaccaaggctataaacctgctc
ccagcaaatactcaaattagtgagattcgaatcttcctagaaaaagtccttgaagaaaat
gcccagaagaagagattcaaccaagtactcaaaaatcttctccatgcagaattcctgagg
gttcaggaggagaggattttgcatcagcaggtgaagtgtatcatcacagaggaaaaagtg
tgcactgtgtgtaaaaagaagataggaaacagtgcatttgcccgataccctaatgcagta
gttgtgcactacttctgctccaaagaagtcagtacggcagacacctga

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