Emys orbicularis (European pond turtle): 135881247
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Entry
135881247 CDS
T11511
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
eob Emys orbicularis (European pond turtle)
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
eob04121
]
135881247 (PDZRN3)
Enzymes [BR:
eob01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135881247 (PDZRN3)
Ubiquitin system [BR:
eob04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
135881247 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
Sina_ZnF
zf-RING_5
zf-TRAF
Prok-RING_4
PDZ_Tricorn
zf-rbx1
RING_XB3-XBAT31
U-box
Motif
Other DBs
NCBI-GeneID:
135881247
NCBI-ProteinID:
XP_065263899
LinkDB
All DBs
Position
7:120223087..120433654
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AA seq
1060 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVQCQRIS
TKELNHVLPLKSLILKLDIKCEHHARGCGQVVKLQHLGAHAERCDYSPARCRHPGCSEVL
NRRDVDAHMRESCEARPVGICEQGCGLVLTHREQRAGGHCCLAALQGHNSCLQAKVGGLE
KELKKEALRAGKREKSLLAQLSAVQLELQMTALRYQKKFTEYSARLDSLSRSLAAPPCKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFISKIIDSGPAAKEGGLQIHD
RIIEVNGKDLSKATHDQAVEAFKTAKEPIVVQVLRRTPRTKIFSPSHESHLVDMGTQTDI
TFEHIMALTKMGSPPPPVSVLDPYLLPEDHSSVHEYYDPNDYMGGIHQEMDRDELELEEV
DLHRVNSQDKLGLTVCYRTDDEDDIGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQN
REEAVALLTSEESKNVSLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNADDHTTSSNTS
GSQKKLVYSHDTLGSGDMQFSNESFISADCTDTDFLSIPVDECERFRELLELKCQVKSAN
PYSLYYHNSALDISKSDHESVDRELEMLNEELRNIELECLNIVRAHKMQQLKDQYREPWM
LHNSGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLQISPDNSLR
RTAEGSSCQGNEGAVAYNVSQKNLLPSSESHESGSAKYLSSPKDPDLGKQLESKERKASD
GSKSPAQKLSDSYISPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMC
KDFNSSSQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAISE
MKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQGADEKKEMNIIELSHKKMM
KKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggatcgcttcagcggggaggtggatcccgacttcaagtgcaacctg
tgcaacaaagttctggaggacccgctgaccaccccgtgcggccatgtgttctgcgcgggc
tgcgtgctgccctgggtggtgcagcagggcagctgcccggtgcagtgccagcgcatctcc
accaaggagctcaaccacgtcctgccgctcaagagcctcatcctcaagctggacatcaag
tgcgagcaccacgcccggggctgcgggcaggtggtgaagctgcagcacctgggcgcccac
gccgagcggtgcgactactcgccggcccgctgccgccacccgggctgcagcgaggtgctg
aaccgccgcgacgtggacgctcacatgcgggagagctgcgaggccaggccggtgggcatc
tgcgagcagggctgcggcttggtgctgacccaccgggagcaacgcgccggcggccactgc
tgcttggcagccctgcagggccacaacagctgcctgcaggcgaaggtcggcgggctggag
aaggagctgaagaaggaggcgctgcgggccggcaagcgggagaagtcgctgctggcccag
ctctcggccgtgcagctggagctgcagatgacagcgctgcgctaccagaagaagttcacc
gagtacagcgcccgcctggactcgctcagccgcagcctggccgcgccgccctgcaagggt
gaagagactaaagcactgactcttgtccttcatcgtgactctggctctcttggatttaat
attattggtggccggccatgtgtggacaatcaagatggctcatctagtgaaggaattttt
atatcgaaaataattgacagtgggcctgctgccaaagaaggagggctgcagattcacgac
aggattattgaggtaaatggaaaagatttatctaaagcaacacatgaccaggcagtggaa
gcattcaaaacagccaaagagcccatcgttgtgcaggtcctgaggagaactccacgcact
aagatcttcagtccttcacatgagtctcatctggtagatatgggcacccagaccgatata
acctttgaacatatcatggctctaaccaagatgggatcccctcctccgccagtctcagta
ctagatccatacctcttacctgaggatcattcatcagtgcatgaatactatgacccgaat
gactacatgggaggcattcatcaagaaatggacagagacgagttagaattagaggaagtg
gacttgcatagagtgaacagccaggacaagctcggccttactgtatgttatcgaactgat
gatgaagatgacattggtatttatgttagcgagattgatcccaacagcattgctgcgaaa
gatggtcgcctgcgggagggagatcgcattattcaaattaatggcatagaggtacagaac
cgagaagaagctgtggcacttctaaccagtgaagagagcaagaatgtctccttacttgta
gcaagaccagaaatccagctggatgaaggatggatggatgatgacagaaatgattttctg
gatgacttacacatggacatgctagaggaacagcaccaccaggcaatgcagtttactgcc
agcatgcttcagcagaagaagcacgaagaagatggaggcaccacagacactgccactatc
ttatctaaccagcacgagaaggacagcggtgtgggacgcacagatgagagcacgcgaaat
gatgaaagctcagagcaggagaataacgccgatgatcacaccacttcctctaacacttca
ggaagccagaagaagctggtgtacagtcatgacactctaggaagtggtgacatgcagttc
agcaatgagtcatttatctcagccgactgcacagacacagacttcctcagcatcccagtg
gatgaatgtgagagattccgcgaactgctggagctgaagtgccaagtcaagtctgccaac
ccatacagtctgtattatcataacagtgccctggatataagtaagagtgaccacgaaagc
gttgacagggagctggagatgctgaacgaggagctgcggaatattgagctggagtgtctg
aatatcgtgagagctcataaaatgcaacagctgaaggatcaataccgggagccctggatg
ctccataacagcggattccgtaactacaacacaagcatcgatgcacgcaggcacgagctc
tcagacattacagagctccctgagaaatctgacaaggatagctcaagtgcgtataataca
ggcgagagctgtcgcagcacaccgctcacgctgcagatttcccctgacaattcactgcgc
agaactgcagaaggcagcagttgtcaaggtaatgagggggcagtggcatacaatgtctcc
cagaagaatttgctacctagctcagaaagtcacgaatccggctccgctaaatatctctcg
tcacctaaagatccagaccttggcaagcaactggaaagcaaagaacgaaaagccagtgat
ggaagcaaaagcccagctcaaaaactgtctgactcctacatctctccatatcatcactct
ccctataaacacgctcatatcccagcccacgctcaacactatcagagctacatgcagctg
atacaacagaaatcagccgtggaatatgcacagagccaaatgagcctagtgagcatgtgc
aaagactttaattcttcaagccagagtgaacccaggatggaatggaaagtcaaggtcagg
agtgatggaacccgctacatcacaaagaggccagtcagggacaggctgctgagagaacgt
gccataaagattaaggaagagcgcagtggtatgacgacagatgacgacgctataagcgag
atgaagatgggccgctattggagcaaggaggaacggaagcagcatttggtgaaagcgaag
gagcagaggaggcggcgtgagtttatgatgcagagcaggttagattgtttaaaggaacag
caaggtgcagatgaaaagaaagagatgaacatcattgaactgagccacaaaaaaatgatg
aagaaaaggaataaaaaaatctttgataattggatgacaatccaagaactcttaactcat
ggcacaaagtcccccgatggcacaagagtgtacaattccttcctgtcagtgactactgta
taa
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integrated database retrieval system
