Emys orbicularis (European pond turtle): 135881510
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Entry
135881510 CDS
T11511
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
eob Emys orbicularis (European pond turtle)
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
eob00536
]
135881510 (COL13A1)
Glycosaminoglycan binding proteins [BR:
eob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135881510 (COL13A1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135881510
NCBI-ProteinID:
XP_065264251
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Position
7:complement(44296650..44455933)
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AA seq
837 aa
AA seq
DB search
MLEEKGWKGASNGAFDRGCIAPPRTGDGERCCRFPLLLGSGLPGVSLISLVLSLLLYFRT
SDLQSRVSHLEADRCTQLPAWLSADQMETAILGRVDQLLDEKLKFNLPRHREVRDTHQRC
NCPAGPPVSTKVPVRLRSVHLMGPTGRPGLPGDKGAMGIPGRPGLKGQPGEKGTPGEAGM
SIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGQKGEMGVAGPKGQPGPPGQKGEKGQC
GDYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPTGPSGPAGNPGQ
PGPVGPPGKTGEPGKAGKDGKGLPGSPGPKGDPGIQGYHGRKGEVGEAGLPGAPGLPGPI
GPKGEKGDTGMKGERGMPGLPGKHGAKGAPGMAAAGMKGEPGVAGMMGPPGLPGKRGQRG
EKGRAGDPGLPGFLGQKGEKGDAGNALGGGKGEPGHPGLPGPPGPKGEAGDIGQTGIAGP
QGEKGEPGAPGEQGPVGPRGPKGEPGKDEMVDYDGNINEALQEIRTLALMGPPGLPGVAG
PPGLPGQKGDIGLPGPPGHDGEKGPRGKSGEVGPPGPQGPPGKEGPPGVKGETGLTGTPG
AKGGKGEAGEAGSPGLDGPTGEKGEQGDQGIPGPSGLPGLIGLPGLTGEKGEPGEDGEKG
DPGDSVSGPPGPQGPPGVAGLQGLPGPKGEAGIDGMKGEKGVQGEKGDRGPLGLPGTPGP
IGAPGPAGPKGERGSKGDPGNAGPMGLAGLPGLQGPSGDKGNRGERGKKGSRGPKGDKGD
QGAPGLDAPCPLGEDGLPVQGCWNKVPKGTALYRSEGHFPCQIGRIKEYLKCYGFYY
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagggctggaaaggtgctagcaatggtgccttcgacagggggtgcatt
gctccccccaggacaggggatggagaaagatgctgcaggtttcctctactgctgggctct
gggcttcctggggtgtctttgatttctctggtgctgagcctcctgctatactttaggaca
tcagacctgcaatccagggtttcacatttggaagcagacagatgcactcagctccctgcc
tggctctctgcagaccaaatggagacagctattttgggaagagttgaccaactgcttgat
gagaaattaaagttcaacttgccgagacatcgagaagttcgagatacccaccagaggtgt
aactgcccagcagggcctcctgtaagtaccaaagttccagtgcgtttgcgaagtgtgcac
ctgatgggccctacaggaagaccagggcttccgggagacaaaggcgccatgggaatccct
ggaagaccgggactaaaggggcaacccggagagaagggaacccctggagaagcaggcatg
tccatcatcggtccccgaggccctcccggccagcctggaacgagaggttttcctggattt
ccgggcccgattggtttggatggcaaaccaggccatcctggacagaagggggagatgggt
gttgctggtcccaagggacagccgggacctccaggacaaaaaggagaaaagggccagtgt
ggagactacccacacaggctgttgcctctcctcaattcagtgcggctggctccacccccg
gtcataaagagacgcactttccagggtgaacaaggacaggcggggattcaaggtccgcca
gggccacctggtccaccagggccaactggaccatctggaccagcaggaaatccaggacaa
cctggcccagttgggccacctggcaaaacaggggagcctggaaaggcaggcaaggatgga
aagggtttacctggatcccctggaccaaagggagaccctggaattcaaggataccatggg
aggaagggtgaggtgggtgaggctggcctaccaggtgcacctggccttcctggacctatt
ggccccaagggtgaaaagggggacactggcatgaagggggagaggggcatgccagggctg
ccaggaaaacatggagctaagggggctcctggaatggctgctgcagggatgaagggagaa
cctggagttgcagggatgatgggccccccaggtttgccagggaaaaggggacagaggggg
gagaagggaagagctggtgatcccggacttcctggattcctaggacagaagggagagaag
ggagatgctggcaatgcactcgggggaggtaaaggggaacccggacacccgggactacct
gggcctccaggaccaaagggggaagctggtgacattggccagactggcattgcaggacct
cagggggaaaagggagaacctggagcacccggagaacaggggcctgttggtccaaggggt
cccaaaggggagccaggaaaggatgaaatggtggattatgatggtaacatcaatgaagct
ctacaggaaatacgaaccttggccctgatgggacctcctggacttccaggagtagctggg
cccccagggctaccaggacagaagggtgacattggtttaccgggtcctcctggacacgat
ggcgagaaggggccacgaggtaaatcaggagaggtggggcctcctggtccccaagggccc
ccaggaaaggagggacctccaggagtgaagggagagactggacttaccgggaccccagga
gcaaaggggggaaagggggaggcaggagaagctggctctccgggtcttgatggcccaact
ggggagaaaggagaacaaggtgaccaagggataccaggaccttcaggattaccgggtcta
attggacttccaggattgacaggagagaaaggagaacctggtgaggatggggaaaaagga
gacccaggggactcagtatcggggccacccgggccccaaggcccaccaggtgttgcaggt
cttcaaggccttccaggaccgaagggggaagcagggattgatggaatgaaaggagagaag
ggtgtccagggtgagaaaggagaccgaggtccactgggattgcccggtactccaggacca
attggagctccaggaccagcaggaccaaaaggggaaaggggcagtaaaggtgaccctgga
aatgcaggaccaatggggctagctgggcttcctggtttacaaggcccatctggtgacaaa
ggaaaccggggggagaggggcaagaaaggctctagagggcctaaaggggataagggagac
caaggagcgcctggattagatgcaccctgtccattgggggaagacggcttgccagttcag
ggctgctggaataaggtgccaaaaggaactgccctatatagatctgaaggtcatttccct
tgccaaatcgggagaattaaagaatatttgaagtgttatggattttattattaa
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