Emys orbicularis (European pond turtle): 135883005
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Entry
135883005 CDS
T11511
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135883005 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eob03019
]
135883005 (SMG7)
Messenger RNA biogenesis [BR:
eob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
135883005 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
135883005 (SMG7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
ubiquitin
Motif
Other DBs
NCBI-GeneID:
135883005
NCBI-ProteinID:
XP_065266102
LinkDB
All DBs
Position
8:complement(56136339..56192825)
Genome browser
AA seq
1147 aa
AA seq
DB search
MLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFY
TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIA
RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA
STNLQKALSKALESRDEVKTRWGVSDFIKAFIKFHGHVYLSKGLEKLSPLRERLEEQFKR
LLFQKAFNSQQLVHITVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFISFLGVL
CKCPLQNDFQEESWGAYPLPAVKVSTDWLKLRPSVFQEPVVDERQYIWPWLISLLNSFQP
HEEDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRVRQQRLIFT
GKWIADNQPRLIQCENEVGKLLFLTEIPELLLEDPSEAKESLVLQETSIAEPLSTDGSPG
LKSVLSTGRNLSNCDTGEKPMVTFKENIKPREVNREQGRIYPPKDVGRERRDYSKGITAT
KNDGKKDNKRKNETKKCSLEKMQEAGKQNVAVQVKSQTEMRKTPVSEARKTPVTQTPSQA
SNSQFIPIHHPGAFPPLPSRPGFPPPAYVIPPPVAFSMSSGYTFPGGVSVPGTFLQPTAH
SSAGNQVQGGKQSHIPYSQQRPSGPGPMNQGPQQTAPPSQQPLTSLPAQATAQSASQLQV
QALAQQQQSPTKAVQALRKSPPHHSGFQQYPQADSSKHLWNPPQVQGPLGKIMPVKQPYY
LQAQDPLKLFEQSLQPPVMQQQPLEKKMKPFPMEPYNHNPSEVKMPEFYWDSSYGMADNR
VVMAQQANMDRRGKRPQGVFRPEQDTVPRMAFEDPKSSPLLPPDLLKSLAALEEEEELIF
SNPPDLYPALLGPLASLPGRSLFKSLLEKPSELMSQSSSFLSLTGFSLNQERYPNSSMFN
EVYGKNLNTSTKAEVTPSMAHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSS
LPSSPPTHNHNSVPFSNFGPIGTPDNRDRRIADRWKTDKPAMGGFGLDYLPATSSSSESS
WHQTSTPSGTWAAHGPAMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQ
GPMNPPH
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgctagtaactgatctggagtatgctttagacaagaaagtggaacaggacctctggaat
catgcttttaagaatcagatcacgacacttcaggggcaggcaaaaaaccgagcaaacccg
aatcggagtgaagttcaggcaaacctttctctgttcctagaggcagctagcggtttctac
acacagttattacaggagctgtgtacagtatttaatgtagacttgccctgccgtgtgaag
tcctcccagctgggaattatcagcaataaacagacgcacaccagcgccattgtgaagccg
cagtctagctcctgctcatacatctgccagcactgccttgtccaccttggagacattgct
cgctacaggaatcagactagccaggcagagtcctactatagacatgcagctcagcttgtt
ccctccaatggtcagccttacaatcagttggctattttagcttcctccaaaggagaccac
ctgaccacaattttctactactgcagaagcattgctgtgaagttccctttcccagctgcc
tccactaatctacaaaaagcactttctaaagcactggaaagtcgggatgaggtgaagact
cgatggggtgtgtctgacttcatcaaggcgtttattaagttccatggccacgtgtatctg
agtaagggcttggagaagctgagccctcttcgagagaggctggaggaacagttcaagagg
ttgttattccaaaaagccttcaactctcagcagttagttcatattactgtcatcaacctg
tttcaactgcatcatctgcgagattttagcaatgaaactgaacagcatagttacagccag
gatgagcagctctgctggacacagctacttgccctcttcatttcctttcttggagtcctg
tgcaagtgtccactgcagaatgacttccaggaagagtcttggggtgcatacccgcttcct
gctgtaaaggtctcgacggactggctgaaacttagacccagtgtcttccaggagccagta
gttgatgaaagacagtacatttggccatggctgatttctctgctaaacagcttccagccc
catgaggaagatctttccagcactaatgctaccccacttccagaggagtttgagttgcag
ggattcttggctctgagaccctcattcaggaacttggatttctccaaaggccaccagggg
attacaggagacaaagaagggcagcagcgacgggtacggcagcaacgactgatcttcaca
ggaaaatggattgctgacaaccagccaaggctgattcagtgtgaaaacgaagtaggaaaa
ctgttgtttttgacagaaatcccagagttgttactagaggaccctagtgaagccaaagag
agtctcgtcctacaagaaacatccattgcagagccactgtctacagatgggagcccagga
ctcaaatcagttctgtctactggcagaaatcttagcaactgtgacactggggagaaacca
atggtcacattcaaagagaacattaaaccacgagaggtaaaccgagagcaagggcgaatc
tatccacctaaagatgtgggtagggaaagaagggactatagcaaaggaataacagctact
aaaaatgatggaaagaaagacaacaagagaaagaatgaaaccaagaaatgcagcttggag
aagatgcaggaagcaggaaagcagaatgtggcagtgcaggtaaaatctcagactgagatg
aggaaaactccggtgtccgaagccaggaaaacaccagtaactcagactccaagccaggca
agcaactcccagttcatccccattcatcacccaggagccttccctcctcttcccagtcgg
ccagggttcccacctccagcatacgttatacctcctcctgtggctttctccatgagctca
ggttacaccttcccaggtggtgtttctgttccaggaacctttcttcagcctacagctcac
tcctctgcaggaaaccaggtgcaaggtgggaaacagtcccacattccttacagccagcag
cggccctctggaccagggccaatgaaccagggacctcaacagacagcaccaccttcccag
caaccccttacatccttaccagctcaggcaacagcacagtctgcaagccaattacaggtc
caagctctggcccagcaacaacagtcccctacaaaagctgtgcaggccctaaggaagagc
ccaccacaccactctggattccagcagtatccgcaggcagactcatcaaagcatctctgg
aatcctcctcaagtccaaggcccattgggaaagatcatgcctgtaaagcagccctattat
cttcaggcccaggaccccctaaaactgtttgaacagtcattacagcctcctgtgatgcag
cagcagcctctggagaaaaaaatgaagcctttccccatggagccatataaccacaacccc
tcagaagtcaagatgccagaattttactgggactcctcctatggcatggctgataatagg
gtagtgatggcacagcaggctaacatggatcgcagggggaaacgaccacaaggagtcttc
cgcccagagcaggacactgtgcccaggatggcttttgaggaccccaagagctcccctctg
cttcctccggacctgttaaagagtctggctgccttggaggaggaggaagagctgattttc
tctaatcctcctgatctttacccagctctgctggggcctctcgcctctcttcctggacga
agcctctttaagtccctattagaaaaaccatcggagttgatgtctcagtcatcttctttc
ctgtccctcactggcttctccttaaaccaggaaagatatccaaacagcagcatgttcaat
gaggtatatgggaaaaacctgaataccagcacaaaagcagaggtcactccctcaatggcc
catcaggagacatcactatattcgctctttgaagggacgccctggtctccatccctccca
gcaagctcagatcattcaacaccagccagccagtctcctcactcctccaacccaagcagt
ttgccaagctcccctccaactcataaccacaattctgttccattctccaactttggacct
attggaacgccagacaacagggacaggaggattgcagaccgttggaaaacagataaacca
gcaatgggaggatttgggctggactatctcccagcaacatcctcctcctcggagagcagc
tggcaccagaccagcactcccagcggcacctgggcagcccatggccctgctatggaggat
tcctccgctgtgctcatggagagcctgaagtccatctggtccagttccatgatgcatcct
ggaccgtcagccctggagcaactgttaatgcagcagaagcagaagcagcaacgtggacaa
ggccccatgaatccaccacactga
DBGET
integrated database retrieval system
