Emys orbicularis (European pond turtle): 135883362
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Entry
135883362 CDS
T11511
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03013
Nucleocytoplasmic transport
eob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135883362 (UPF3B)
03015 mRNA surveillance pathway
135883362 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eob03019
]
135883362 (UPF3B)
Messenger RNA biogenesis [BR:
eob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135883362 (UPF3B)
mRNA cycle factors
P-body specific factors
135883362 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
135883362
NCBI-ProteinID:
XP_065266498
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All DBs
Position
9:complement(13434910..13444378)
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AA seq
464 aa
AA seq
DB search
MKEDKENTRPKEKRAPGGPLDPRGGGEPERPKDKKETLSKVVIRRLPPSLTKEQLEEHLQ
PLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAAIVE
FAPFQKSAKKKNKKKDAKTGTIDDDPEYKKFLESYSADDEKLTSTPETLLEEIEARNKEL
IAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRKWKEEERRKRKEAEKLKK
VDKCPEKERDKSKDEPKIKLLKKPEKDERDLEKKEKFKKLEKEIVREEKAAGALISVSAK
RSDGETKEEKAKKSEDEYGKDYRDRERDFEREREYERLQREKQRRQDEERRRQKERFEKE
KVFRKREEEVKKEINSFREKGRKSELPDFTGNTEKAEKITKDDKKEDAAKRDRIRNKDRP
AMQLYQPGVRSRSRLCPYEDMATKSVDQGADKQESETSNTKEEE
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggataaggagaacactaggcctaaagagaagcgggcgcccgggggccccctg
gatcccagggggggcggggagcctgagcggcctaaggacaagaaggagacgctcagtaag
gtggtaattcgacgcttgcctcccagcttgactaaggaacaacttgaagaacatcttcag
cctttgcctgaacatgactattttgaattctttgctaacgattccagtttgtatcctcac
atgttttccagagcatacatcaactttaaaaaccaagaagacatagtactgttcagggat
cgctttgatggttatgtttttgttgatcacaaaggtcaggagtatgctgccatagtagaa
tttgcacctttccaaaaatctgcaaaaaagaagaataagaaaaaggatgccaaaactggg
actattgatgatgacccagagtataagaagtttttggaaagttacagtgcagatgatgaa
aagttaacatcgactcctgaaacactactagaggaaatagaggcaagaaacaaagagtta
atagctaaaaagacaactccccttctgaacttcttgaaaaacaaacagagactgagagaa
gaaaaaagagaggagaggagaagaagggaactggaaagaaaaagacaaagagaagaagaa
aggaggaaatggaaagaagaagaaagaaggaagagaaaagaagcagaaaaactgaagaaa
gttgataaatgcccagagaaagaaagggataaatcaaaggacgaaccaaagattaagcta
cttaagaaaccagagaaagatgaaagagacttggagaaaaaggaaaagttcaagaaactg
gaaaaagaaattgtgagggaagaaaaggctgctggcgcactaatcagcgtgtcagccaaa
cgatccgatggagagactaaagaggagaaggcaaaaaaatctgaagatgaatatggaaaa
gattacagggaccgggagagagactttgaaagagagagagaatatgagagactgcagcgg
gagaaacagagacgccaagatgaagagcgtcgtaggcagaaggaacgctttgagaaagaa
aaagtttttagaaaaagagaggaagaggtgaaaaaggagataaactcattcagagagaaa
ggaaggaaaagtgagcttccagactttacaggcaacacagaaaaagctgagaaaattacc
aaagatgacaaaaaagaggatgcagctaagagagatcgcatcagaaataaggatcgtcca
gcaatgcagctataccagccaggagttcgaagtcgaagtagactgtgtccttatgaagac
atggctacaaagtctgtggaccaaggagcagataaacaggaaagtgagaccagtaataca
aaagaagaggagtga
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