Emys orbicularis (European pond turtle): 135884077
Help
Entry
135884077 CDS
T11511
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob04136
Autophagy - other
eob04140
Autophagy - animal
eob04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
135884077 (ATG16L1)
04136 Autophagy - other
135884077 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
135884077 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
eob04131
]
135884077 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
eob03029
]
135884077 (ATG16L1)
Membrane trafficking [BR:
eob04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
135884077 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
135884077 (ATG16L1)
Mitochondrial biogenesis [BR:
eob03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
135884077 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WDR55
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
ANAPC4_WD40
NBCH_WD40
eIF2A
Beta-prop_IFT122_1st
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_ACSF4
Beta-prop_HPS5
Beta-prop_WDR41
Beta-prop_WDR19_1st
Tricorn_2nd
Beta-prop_VPS8
PUMA_CC
INO80F
Peptidase_M15_4
CCDC93_CC
AP5B1_middle
HEF_HK
WHD_CYT4
V_ATPase_I
DUF7310
YicC-like_N
Motif
Other DBs
NCBI-GeneID:
135884077
NCBI-ProteinID:
XP_065267441
LinkDB
All DBs
Position
9:57838794..57863196
Genome browser
AA seq
623 aa
AA seq
DB search
MTSGLRAASFPTWKRHIAEELRRRDRLQRQAFEEIILQYNKLLEKTDLHAVLADKLQAEK
YDLQSRHEISPGHDGTRNEAQLQEMAQLRIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DREMQINEAKIAEYMQKISELETECQELRSKLQELERANQTLKDEYDALQITFTALEEKL
RKTTEDNQELVTRWMAEKAQEANRLNAENEKDSRRRQAKLQKELAEAAKEPLPVEQDDDI
EVLVDETSDPAEETSPVRAVSRTSSKRLSQPAGGLLDSITNIFGLSESSLLGHHSSDAAR
RRSLSSFPAPQENVDVHPGSSKEVRVPTTAVYVFDAHDGEVNAVQFSPASRLLATGGMDR
RVKLWEVFGDRCELKSSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTL
TGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMS
GHFDKKIRFWDIRTESIVQELELFGRITALDLNPERTELLTCSRDDLLKIIDLRVNAVKQ
TFSAQGFKCGSDWTRVVFSPDGSYVAGGSADGVLYIWNVLTGKVERTLAKHHSSSINAVA
WSPAGAHVVSVDKGNKAVLWSEF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgacttctgggctcagagctgcgagtttccccacgtggaaacgtcacattgcagaggag
ctgaggcgccgggaccggctgcagagacaggcctttgaagagatcatcctccagtataac
aagctgctagagaagactgatctccatgccgtgctggctgataaactgcaagcagaaaag
tatgacttgcaaagcagacatgagatcagtccagggcatgatggcacaaggaatgaagct
caattgcaggaaatggcccagctgaggattaaacatcaagaggagctgacagagctgcat
aagaagcgtggcgagttggcccagtcagtgattgatttgaataaccaaatgcagcagaaa
gacagggagatgcagataaatgaagcaaagattgcagaatacatgcaaaagatctctgag
ctggaaacagagtgccaggaactgcgcagcaagctgcaagaacttgagcgagccaatcaa
acactgaaggatgagtatgatgctctccagatcaccttcactgccctagaagagaaactg
aggaaaactactgaagacaaccaagagctggtcacacgttggatggcagagaaggctcag
gaagctaatcggctcaatgcagagaatgagaaggactcgaggaggcgacaagccaagttg
cagaaagagctagcagaagctgcgaaggaaccgctgccagttgaacaggatgatgatatt
gaagtgcttgtggatgaaacttctgacccagctgaagagacttccccagtgcgagctgtc
agccggacatccagtaagcgactgtcccagccagctggaggccttctggactctatcact
aatatttttggtctgtctgagtcttcccttttgggacatcactcttctgatgctgccaga
aggcgctctctgtcctcatttcccgctccccaggaaaatgtagatgtgcatccaggttcc
agtaaagaagtgagagtgcccactactgcagtgtatgtctttgatgcacatgatggagaa
gtgaacgcagtgcaattcagtcctgcttcccggttactagcaacaggaggcatggatcgg
agagttaaactctgggaagtctttggagacaggtgcgagctgaaaagttctctctctggc
agtaacgcagggattacaagtatcgaatttgacagtgctggctcttatctcttagcagct
tcaaatgacttcgccagcagaatctggactgtagatgactatcgattacggcacacactg
acaggccacagtgggaaggttctgtcagccaagttcttgctggataatgcacgcatcgtg
tcagggagtcatgaccggaccctcaagctctgggacctgcgcagcaaagtttgtataaaa
acagtatttgcaggatcaagctgcaatgatatagtgtgcacagagcagtgtgtgatgagt
ggacattttgacaagaagattcgcttctgggacatcaggactgagagcatagtgcaggag
ctggaactgtttgggaggatcactgctttagacctgaacccagagagaacagagctcttg
acctgttcccgagatgatctgctgaagatcattgatttgcgagtcaatgctgtcaaacag
actttcagtgcccagggattcaaatgcggatctgactggaccagagtcgtgttcagccct
gacggtagctacgtggcaggtggttcagctgatggggtcctgtacatctggaatgtgctc
actgggaaagtggagagaactcttgcaaagcatcacagctcctctatcaatgcagtggca
tggtcaccagccggtgcccatgtggtcagtgtggacaaaggaaacaaggctgtcctgtgg
tctgaattttga
DBGET
integrated database retrieval system
