Emys orbicularis (European pond turtle): 135885599
Help
Entry
135885599 CDS
T11511
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
eob Emys orbicularis (European pond turtle)
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
eob04147
]
135885599 (COL18A1)
00535 Proteoglycans [BR:
eob00535
]
135885599 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
eob00536
]
135885599 (COL18A1)
Exosome [BR:
eob04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
135885599 (COL18A1)
Proteoglycans [BR:
eob00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
135885599 (COL18A1)
Glycosaminoglycan binding proteins [BR:
eob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135885599 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF959
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
135885599
NCBI-ProteinID:
XP_065269491
LinkDB
All DBs
Position
11:complement(76406742..76512329)
Genome browser
AA seq
1875 aa
AA seq
DB search
MAPVEQRLCLLLLLTCCCSLAEAQFFGWLWGSPKNPKVTTLPPTESPATEGQTAELLTSP
VATTTQAAGPATAQPGDRVWSTLSVTRQATAMDTAVPALVPPAMPQGKEENIAGVGAEIL
DVAEGIRSLVHLWDERTNQRTGNTGEPTAAAPLTTPHTSLAAVSSATGLAGRGNMTANLT
GDGHSLLGTGQPEASLPMPTGPPPAWNRTQALLQKPAAALPGSASFSFSPGGGARGEMGA
SQEYLFAEDQEGAALPQARAGGGVASEKRGGVSPTASVPDWWELQTDISVHAGIPAQLAG
SLDNWLSHYIAHSNQSVSYGNSTRRSLKNNSSQSVQSTDPSIMHFGMAVADLNRNHTDAV
SNMNATNSVEFFSANNSESLEFDLLTYTMQLYNNGSAGFASFFPGLTLTAGRCLPFPADL
PYCNNLGIRHFRLPNYFHHGSDVEIRAALHEWEGLLTSRCHRYLEWFFCLLLVPGCNASI
PITPPPCWGFCEAVRDLCWIHLKEGRLPISCDSLPAEDAGYSCVFVNVSAEHFSTEVSLL
QLIGDPPPEQITKVNGPDNTLAYVFGPDANTGQVARYHLSSPFYRDFSLLFHVQPTTDKA
GVLFAITDASQTVIYVGVKLSAVHDRKQQIIFYYTEPGSESSYAAATFSVPSLANEWTRF
AISVEDDEVVLYLNCEEFRRVRFERSPDEMELEDGSGLFVAQAGGADPDKYQGVIADLKV
TGDRQAADLQCEEQDEDTDVASGDFGSGVEERPHLSGRERGTPAVSRLPEPPPVTSPPTA
GETVEKVSVGSQLQTEQIKVEGPQQVSTGATVGSKGEKGAPGEKGERGPKGDSGTGGVLA
AGGTKGDKGEKGDLGVKGSAGFGYPGSKGQKGEPGAQGSPGPPGPPGSTVQRLDGSVVEQ
VTGPPGPTGPPGPPGEDGLPGKDGEPGDPGEDGKPGDVGPQGFPGTPGEPGLKGQKGEPG
VGARGPPGLPGPPGTPGLSSKQDKLTFIDMEGSGFGGDLESFRGPRGPPGPPGPPGVPGL
PGEPGRFGMNSTELPGPPGLPGLPGRDGVPGAQGPSGPPGPPGKSGLAGQPGLRGERGDP
GDLGLPGAPGPKGGKGEMGLAGAPGETGLAGLPGPMGPRGPPGPPGPAGPPGPGYEAGFG
DMEGSGMPVLSAVPGERGPEGPQGPPGLPGLKGDAGSPGLPGLPGQKGDHGAPGVDGRPG
LEGFPGPQGPKGDKGSQGAKGERGQDGVGSPGPPGLPGPPGQVIYALGEEKALASLPGPE
GREGHAGFPGPVGPKGDPGDPGFPGTPGPKGEKGEPGATIGPDGTGISAGTKGDKGEQGL
VGPMGPAGPHGRPGQKGEIGFPGRPGRPSMNGLKGEKGDPGGFGLQGPPGPPGPPGAPGS
AVSVYDNNAFSESGPPGPPGLPGYQGAPGQKGERGETGTPGPPGQFPYDLNEFGSTFRGE
KGDRGDAGLKGEKGEPGEGGLYGPSVSGPPGPQGYPGLPGPKGDSIRGLPGPPGPQGPPG
IGYEGRQGPPGPPGPPGPPSFPGPHRQTVSIPGPPGPPGPPGPPGTSGSLTSSGLRILPA
YESMLSTAQEVPEGWLIFVQDREELYVRVRSGFRRVRLEEHTSISSPGLDNEVYDKPPSV
HYSHGGTASSGFLHPRREHNPSSTARPWRADDSIANHHRLPDHSPHGAQPQQEPLDSFSP
NRRGESAPSAIHRHPDFQPALHLVALNAPLSGSMRGIRGADFQCFQQARAVGLMGTFRAF
LSSRLQDLYSIVRRADRSGVPIVNLQDEVLFNNWEALFSGTEAQFRAGVRILSFDGRDVL
RDSAWPQKNVWHGSDAKGHRLTESYCETWRTDDGVVTGQASSLASGKLLEQKVSSCQNTF
IVLCIENSFMTSSKK
NT seq
5628 nt
NT seq
+upstream
nt +downstream
nt
atggctccagttgagcagcgtctgtgtctcctgctcttgctaacctgctgctgctccttg
gcggaggcacagttttttggctggctctgggggagcccaaaaaaccccaaggtaacgacc
ctgccccccacagagagccccgctacggagggacagacggcggaactgcttacctctcct
gtggccaccacgacacaggctgctgggccagcgaccgcacagccaggggaccgagtatgg
agcacactctccgtcacgaggcaggcaacagccatggacaccgctgtccccgctctggta
ccacctgccatgccccagggcaaagaggagaacattgcgggggtgggggctgagatcctg
gacgtagcagagggcatcaggagcctggtccacctgtgggatgagaggaccaaccagagg
accgggaacacaggggagcccacagccgctgctcctctgacaacccctcacaccagcctg
gctgctgtaagctctgcaacggggctggctggccgtgggaacatgactgccaacttgaca
ggggatggccacagcctgctcgggaccgggcagccagaggcttcacttcccatgccaaca
gggcctccgcctgcctggaacaggactcaggcgctcttacagaagcctgcagcggctctt
ccaggtagtgcttctttctcgttttcaccaggtggaggtgcccgtggtgagatgggggct
tcccaggaatacctctttgcagaggatcaggaaggtgctgccctcccacaagcaagggct
ggcgggggagtggcctcagaaaagagaggaggagtttcaccgaccgcaagtgttccggac
tggtgggagctgcagaccgatatcagcgtgcatgccgggattccagcccagctggcaggt
tctttagacaactggctatcccattatattgcacattcaaaccaatcggtctcgtatggg
aatagtacccgtcgcagccttaaaaataacagcagccaatcagtgcaaagcactgaccct
tccataatgcattttgggatggcagtggctgatttaaataggaaccatactgatgctgtt
tctaatatgaatgcaactaattctgtggaatttttttctgccaataattctgaatctctt
gagtttgatttactaacctacactatgcaactttataacaatggtagcgcagggtttgct
tccttctttcctggattgacacttacagcgggtcgctgcttgcccttcccagccgatctg
ccatattgcaacaacctgggcataaggcatttcagattaccgaattatttccatcatggc
agtgacgtggaaattcgggctgctttgcatgagtgggaggggcttctgacatctcggtgc
caccgctacctggaatggtttttctgcttgctgctggtccccgggtgcaatgcttctatt
ccgataacgcccccaccgtgctgggggttctgtgaggccgtgagagatctgtgctggatt
catttgaaagaggggcgcctcccaatatcatgtgactctctccctgcagaggatgctggg
tattcttgtgtgtttgtaaatgtgtctgcagaacatttcagcacagaagtcagtcttttg
cagctgatcggagatcccccaccggagcaaataaccaaagtcaatggccccgacaacact
ctcgcctatgtcttcgggccggatgccaacaccggtcaagtggcccggtaccacctgtct
agccccttttatagagacttctcactccttttccatgttcagcccaccaccgacaaggcc
ggcgtgctctttgccatcacagatgcctcgcagacggtcatctatgttggagtgaagctc
tccgcagtgcacgacaggaagcaacagatcatcttctactacacggagccgggctccgag
agctcgtatgcagctgcaacattctccgtgccttctctagcgaatgagtggactcgcttt
gccatcagcgtggaggatgacgaggtggttctgtacctgaactgtgaggagtttcgccgg
gttcggtttgagcgctctcccgatgagatggaactggaggatgggtctgggctctttgtg
gctcaggctggaggggctgatccagataaataccagggggtgattgcagatctgaaagtg
acaggtgatcgccaggcagctgatctccagtgtgaggagcaggacgaggatactgatgtg
gcatctggagattttggaagtggagttgaagaaaggccccacctatcaggaagggaacgg
gggaccccggctgtgtcgcggctcccggaacctcccccggtcacttctccccccaccgct
ggggagacagtagagaaagtaagcgtgggctctcagctgcaaactgagcaaatcaaagtg
gaaggaccacagcaagtttctacaggagccacggttggttcaaaaggtgaaaaaggggcc
ccgggagagaaaggtgaacgtggcccaaaaggggactccggaaccggcggggttctagca
gccggcggcaccaaaggcgacaagggagaaaaaggagacctgggcgttaagggaagtgca
ggatttgggtatcccggctctaaggggcagaaaggggagccaggcgcccagggatctcct
ggcccgcctgggccccctggctctacggtgcagcgcctggacggctctgtggtggagcag
gtcaccgggcctccaggaccaacaggtcccccagggccgcccggggaagacggcctccct
ggcaaggacggcgagcctggtgatcctggtgaagatgggaaacctggtgacgttgggccc
cagggattccctggaactcccggagagcctggcctcaaggggcagaagggtgagcccgga
gtcggcgcaagaggcccccctggactgcccggaccgcctgggacaccaggtctctcttcc
aaacaggacaagctgacattcatcgacatggaaggctctgggtttggaggcgatctggaa
agcttccggggcccccgaggcccaccagggccccccgggcctcctggggtgcccggcctc
ccaggagagccaggaagatttgggatgaacagcactgagctgccaggaccccccggcctc
cccggcctgccaggcagagatggtgtccccggagcccaaggcccatcaggtcctccgggt
cctccaggaaaaagtgggttggccggccagcctgggcttcgaggagaacggggggaccca
ggagacctaggcctccccggagctcctggacccaagggcggtaagggcgagatggggctg
gccggagccccaggggaaaccgggctggcaggccttcctggaccaatgggaccgcgagga
ccaccaggtcccccaggccctgctggacctcctgggccaggctacgaggccggatttgga
gacatggaaggctcgggaatgccggtcctttctgccgttcctggagagcgtggtcccgaa
gggccacaggggccaccgggactccccggactcaagggggacgctggcagccctgggctg
cctggcttgccaggacaaaagggggaccacggtgctccgggagtggatgggcgcccaggg
ctggaaggtttcccaggacctcagggacccaagggtgacaagggcagtcagggggctaaa
ggtgaacgaggccaagatggagtgggctccccaggcccccccgggctccctggacccccg
gggcaggtcatctatgcgttgggtgaagagaaagcattagctagtttgccaggccctgag
ggcagagaaggccatgctggcttcccgggcccagtgggacctaaaggagacccaggagac
ccaggtttcccaggcactccaggaccaaagggtgagaaaggagagcctggagcgaccatc
ggcccagatgggacgggcatctcagctggcacgaaaggagacaagggtgagcaggggctg
gtgggacccatgggcccagcaggcccgcatggacgacctggacagaagggggaaatcggc
tttcctggcagaccgggtcgtcccagcatgaatgggctgaagggcgagaaaggggacccc
ggagggtttggcttgcagggtcctcctggtccccccgggcccccaggcgcccctggcagt
gcagtgtccgtctacgacaataacgcatttagtgagtcgggccctcccggccctccagga
ttgcctggctaccagggtgccccaggacaaaagggtgaacgaggcgagacaggcaccccc
gggcccccaggccagttcccttatgatctcaacgaatttggttccaccttccggggtgaa
aaaggagatcggggggacgctggactgaaaggagagaagggggagcccggcgagggagga
ctgtatggaccaagcgtctctggacctccaggtcctcagggctatcctggccttccgggt
cccaagggggacagcattagaggcctgcctggccccccagggcctcagggaccccctggc
attgggtacgaggggcggcaaggtccccctgggcctcccgggcctcctgggcccccctcc
tttccaggaccccacagacaaactgtcagcatccctggcccacctgggccaccagggcca
ccgggacctccagggaccagcgggtcgttgacctcttccgggctgcggatcttgccagca
tatgagtccatgctgagcacggctcaggaggtgcccgagggctggctgatcttcgtacag
gacagagaagagctgtacgtccgggtgcggagcggcttccggagagtccgtctggaggaa
cacacttccatctccagccccgggctggacaatgaagtgtacgacaagccgccaagtgtc
cactactcgcatggcggcactgcctcctctggcttcctgcacccacgccgagagcacaac
ccctcctccacagcccggccctggcgagcggacgacagcatcgccaaccaccaccgcctc
cccgaccactcgccccacggcgcccagccccagcaagagccattggacagcttctcccca
aatcgccggggggagagcgccccctctgccattcacaggcaccctgacttccaacccgcc
ctccacctggtggcgctgaacgccccgctgagcggcagcatgcgtggcatccgtggagct
gacttccagtgcttccagcaggcccgggcagtcgggctgatgggcacgttccgagccttc
ctgtcctcccggctgcaagacctgtacagcattgtgcgcagggccgaccggagcggagtg
cccatcgtcaacctccaggatgaagtgctgtttaacaactgggaggcgctgttctcgggc
acagaggctcagttccgagctggtgttcgcatcctctcgtttgacggaagagatgtactg
agagactctgcgtggcctcagaagaatgtctggcatggctctgacgccaagggccaccgg
ctcacagagagctactgcgagacatggaggacggacgatggcgtggtgacaggccaagcc
tcttcgctggcctcgggcaagctcctggagcagaaggtgagcagctgccagaacaccttc
atcgtcctgtgtattgagaacagcttcatgacctcttccaaaaagtga
DBGET
integrated database retrieval system
