Emys orbicularis (European pond turtle): 135886413
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Entry
135886413 CDS
T11511
Symbol
LTN1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
eob Emys orbicularis (European pond turtle)
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
eob03009
]
135886413 (LTN1)
04121 Ubiquitin system [BR:
eob04121
]
135886413 (LTN1)
Enzymes [BR:
eob01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135886413 (LTN1)
Ribosome biogenesis [BR:
eob03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
135886413 (LTN1)
Ubiquitin system [BR:
eob04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
135886413 (LTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
HEAT_GCN1
zf-ANAPC11
FANCL_C
zf-rbx1
RINGv
zf-RING-like
zf-RING_16
DUF7260
KNOX1
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
135886413
NCBI-ProteinID:
XP_065270242
LinkDB
All DBs
Position
1:complement(199267923..199315210)
Genome browser
AA seq
1757 aa
AA seq
DB search
MGGKNKQRTKGNVRPSSSGRAAELLAKERGTVPGFIGFGTSPSDLGYVPAVQGAEEIDSL
VDADFRMVLRKLSKRDVITKLKAMQEFGAMCKERESEVVKGVLPYWPRIYCKISLDHDRR
VREATQQAFEQLILKVKKHLAPYLKSIMGYWLIAKCDTYSPAASAAKMAFETAFPSSKQP
EAVAFCKEEVLNMLQDHLLKETPDTLSDPQTVPEEEREAKYFRILTCSLLALKKLLCMLP
KNEIHSLEEKLIPLQSQNKFWKYGKHSVPQVRSAFFELVSTFCQLLPESMKVEAPRVCPA
VLLSIDDSDAVVCPALWEAVLYILVTIEDCWSHVNAKKGVLPKLWIVLREGGRGLATVIY
PNLLPLISKVPHGITEPKLDFYRTFFSSIIQGLSNERAIASHSECSAIISAFMECLRFAM
LQNLGEEDEQKQIQQMLICDQLIPLIEAVLKETRLQIGPLFYQIAETLSSWETKTEILND
DGTAETFRRLLSNFWDSLSKMYVLHVDAADADEKSLVAISCMLQILQSPESSMKPSKRRT
IKIRFTDENESEINTENGKPAEVTSNGESEILTDPPHILFRRKEPLEDLVCSLAELSIVY
ISEQKSDRHLKFLSALLNSFPSSRVFQVLLEQENGMSAAQTESQEDVKLQHENPSVRFLH
QNLIAWLKEDWRKETDFLVDILYSVLRCCNNNTERKNILDDLTKACSDSVKHSLVSGWLK
GDVLGEKLVILADDLCYKGLKTTTTSSELYCSERWTLLSLVLSQHVKNESLIGDIYVERI
IDKLQAALSKAKDLSEAGNTEPSVSFICDVASNFFSSVKGCLLMPSSEDLLFTIFQLCAQ
SQDATHLSDLLVNKLKHTWLSGLNSLVHQVGYMQKQSTFLHKSALWVKNQIQSSSLDVKS
LQVLISAVNDLLTKLLEAGELSGCLLGTYFGCITPNNSEWEKLRESLPIEWLHKPLLEGR
LSVNCEHSGTEVKLCKTTKLPNHLCTAALLSKMALLIQEHEVVFENHDAERKKIENIIAE
LLYSLQWIEELDDPPCLLLEFLNMLQVISITYEDLSAFGNTTNLLQILFSRSKECGRLWA
LAMVRVIHTKNIASSEIKQLYKMTEGFFPLTEGNLHTVQSLSPFLPEEEKEELVIQCTAK
LMTCMQTELVSTDGAFGYLAILNSCLHSGSIDCRELLPGILKIIMSWRNDNEDSFLFSCN
LKEATPQLLGFNIEMIRYFPLLLKYSTSPLMDNEWDFIMCSMLAWLETTRENHSLYHVPL
VQIFACVSCDLASALSAYFQAATPEAIQNLPMNLISEWKEFFSEGIHNLLLTLLVKVTGE
SKDASEKSFQNSILKSLGEVLTYISKDQLLNHKLPAKFVAGQKTNLPDNLQILLNTLSPL
LLFRARPVQITVYHMLYKLMPELPKFDDEDLKSYGDEEEESALSPPAALMSVLATQELFL
ENILDCIPVGEYAVVQPLSEEFCFILGYLLTWKLILTFFKAASSQLRALYSQYLRRTKNL
NKLLYHLFRLMPENPAFSGPATEVPDKDTKTFFTEELHLGVKDTAVLSSQIPHLACSVYH
MTLKDLPAMVRLWWNSCEKRVFNVVDKFTSKYVSNVLSLQEISSVQTSTQLFNGMTVKAR
SATREVIATYSVDDIFIELIIQLPPNYPLGSITVESGKRVGVAVQQWRNWMLQLSTYLTH
QNGSIMEGLALWKNNVDKRFEGIEDCMICFSVIHGSNYSLPKKACRTCKKKFHSACLYKW
FTSSNKSTCPLCRETFF
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atgggggggaagaacaagcagcgaactaagggcaacgtgcggccctccagcagtggcaga
gctgcagagctccttgccaaggaacgtgggacagtgcctgggtttattggctttggaaca
tctccgagtgatctaggatatgtacctgcagtccaaggagcagaagaaatagacagcctt
gtagatgctgattttcgaatggtgctgcgaaaactctccaaaagagatgtcataacaaaa
ttaaaagctatgcaggagtttggggcgatgtgtaaggaaagagaatcagaagttgttaaa
ggtgttcttccttactggccaagaatttactgtaaaatctcacttgatcatgaccgccgt
gttcgagaagcaacacagcaagcttttgagcaacttattcttaaagtaaagaaacacttg
gctccttatttaaaaagtatcatgggatactggctgattgctaagtgtgatacttactcc
cctgcagcatcggcagctaaaatggcatttgagacagctttcccttcaagtaaacaacct
gaagccgtagcattttgtaaagaagaagttctgaatatgctacaagatcaccttctgaaa
gaaacacctgatacgctcagtgacccacaaactgtaccggaggaagaaagggaagccaaa
tactttcgaattctgacatgctccttgttagccttaaagaagttgctttgcatgttgcca
aagaacgagattcattcactggaagaaaagctaataccccttcaatctcagaacaaattt
tggaaatatggcaagcacagtgtacctcaggttcgctcagctttttttgagttagtttct
actttctgtcagctccttcctgaatcaatgaaagttgaagcaccaagagtttgtcccgca
gttcttctcagtattgatgacagtgatgcagtggtgtgtccagctctttgggaagctgtg
ctttacatccttgttaccattgaggactgttggagtcacgtaaatgccaaaaaaggagtt
ctgccaaaactatggatagtacttcgagaaggcggacgaggtctagctactgttatatat
cctaatctcttgccattgattagcaaggtacctcatggcattacagaaccaaagctggac
ttttacaggacttttttcagctcaataattcaagggttgtcaaatgagcgagccatagct
agccattcagaatgttctgcaattatatctgcatttatggagtgtttacgatttgccatg
ctacagaatttaggtgaagaagatgaacaaaaacaaattcagcagatgcttatatgtgat
cagttaattcctctcattgaagctgtgcttaaagagacgaggttacaaattggtccattg
ttttaccaaatagcagaaacactgagctcctgggaaacaaagacagaaatcttaaatgat
gatggcacagctgaaactttccggagactcttgtcgaatttctgggacagtctctcaaaa
atgtatgtactccatgttgatgcagcagatgctgatgagaaatctttggttgctatatcc
tgtatgctacaaattctgcagagccctgagagctctatgaaaccaagcaaaagaagaacc
ataaagatcagatttacagatgagaatgaatctgaaataaacacagagaatgggaagcct
gctgaagtgacaagtaatggtgaatctgaaatactgactgatccaccacatattttgttt
cgaaggaaagaacctttagaagatttagtctgtagccttgctgaactgagtattgtgtat
atcagtgaacagaagtctgatcggcacttaaagtttctctctgctctgctcaactccttc
ccttctagcagagtttttcaagtgctgttagagcaggaaaatggtatgagtgctgctcag
actgaatcccaggaagatgtaaaacttcagcatgaaaatccatcagtacggtttttgcat
cagaatttaatagcttggttgaaagaagactggaggaaagagaccgattttctggttgat
attttgtatagtgtccttaggtgttgtaacaataatacagagcgaaaaaatattcttgat
gacttaactaaggcatgctcggactcagtgaaacattcattagtctctgggtggctgaaa
ggcgatgtactaggggagaagcttgtaatactagcagatgatctgtgctataagggtttg
aaaaccacaacaacctcatcggaattgtactgttcagaaagatggaccctcctgagcttg
gtattatcacagcatgttaaaaatgagtccttgattggtgacatttatgttgaaagaatt
attgataaacttcaagcagctctttcaaaagctaaggatctttctgaagctggaaatact
gaaccatcagtatcattcatatgtgacgtagcctctaactttttcagctcagttaaaggg
tgcttactgatgccatcttccgaagacttgttgttcactattttccaactgtgtgctcag
agccaggatgctacacacttgtcagatttacttgtcaataaactaaagcacacttggttg
tctggcctaaattcgcttgtgcatcaggttggctatatgcagaaacagagcaccttcttg
cataaatctgcattgtgggtcaagaatcaaattcagtcttcctctttggatgttaaaagc
cttcaggttttgatctctgcagttaatgatttgctgactaagctactggaagctggggaa
ctgtctggttgtcttctgggaacttattttggatgtattactccaaacaactctgaatgg
gaaaagttgcgagaatccctacccattgagtggttacacaaacctcttttggaaggaaga
ctgagtgtgaactgtgagcactcaggaacagaggttaagttatgcaaaacaactaaactt
ccaaaccatctgtgcactgcagcattgttaagtaaaatggcactacttatacaggaacat
gaggtggtgtttgaaaaccatgatgcagaaaggaagaaaattgagaatataattgcagaa
ctgctatactctttgcagtggattgaagaacttgatgatcctccttgtctcctccttgaa
tttctcaacatgcttcaagtaatcagtattacatatgaggacttaagtgcatttggtaat
acaaccaaccttctgcaaatattatttagcagatcaaaagagtgtggaagactttgggcc
ttagccatggttagagtgatccatacaaagaatattgcatccagtgaaataaaacaactt
tataagatgacagaagggtttttcccattaacagaaggcaacttacatacagttcagagc
ctgtctccatttttacccgaagaagaaaaggaagaactagttatccagtgtactgctaaa
cttatgacatgcatgcaaaccgagctcgtcagtactgatggagcttttggatatcttgcc
attttaaactcctgcttacacagtggaagcattgattgtcgagagctactgcctggaata
ttaaaaatcattatgtcatggagaaatgataatgaggacagcttccttttcagctgcaat
cttaaagaagcaacgcctcagttgcttggtttcaatatagagatgatccgttactttcca
ctgttgttaaaatattccacgtctccactgatggacaatgagtgggacttcataatgtgc
tccatgctggcttggttagagacaacaagggaaaaccattcgctttatcatgttccactg
gtgcaaatttttgcctgtgtcagctgtgacttggcttctgcccttagtgcttacttccag
gcagcaactcctgaggctatccaaaatcttccgatgaacctgatcagtgaatggaaggaa
ttcttttctgaaggcattcacaacttgctgttaactttgttggtaaaagtcacaggggaa
agcaaagatgcatctgaaaaatcctttcagaactctatactgaagtccttaggtgaagtt
ctaacatacatttcaaaggaccaattgttgaaccacaaactgccagccaagtttgttgct
ggccagaaaacaaaccttccagataacctacagatcttgttaaacacattatctccattg
ctgctcttccgagctagacctgtacaaatcactgtctaccacatgctatataagttaatg
cccgagttgcctaaatttgatgatgaggatctcaaatcctatggtgatgaagaagaggaa
tcagctttgtcaccacctgcagctcttatgtctgttcttgccactcaagaactctttcta
gaaaacatcctagattgcattccagttggagagtatgcagttgttcagccactgagcgaa
gagttctgcttcattttaggatatcttctcacatggaaattaatattaactttcttcaag
gcagcttcttctcaactgcgggctttatattcacagtaccttcgaagaactaagaatctg
aataaacttctttatcacctgttcaggcttatgccagaaaaccctgccttttcagggcca
gctactgaagtcccagataaggatacaaaaactttctttactgaagaacttcatttaggt
gtcaaagatacagcagtactgtcatctcagattccacacttggcctgctcggtgtatcat
atgacattgaaggacttgccagccatggttaggctttggtggaatagctgtgagaaacgg
gtcttcaatgtagtagataaatttacaagcaaatatgtcagcaatgtactttctttacaa
gaaatatcttctgtgcagactagcacacagttatttaatggcatgacggtaaaagctcgg
tctgctactcgggaagtgattgctacctattcagttgatgatatatttattgaactgata
atacagcttccgccaaattacccactgggctcaataacagttgagagtggaaagagggtt
ggtgtggctgttcagcagtggcgcaattggatgctacagttaagcacgtacctcactcac
cagaatggaagtattatggaaggcttggctttgtggaaaaataacgtggataaacggttt
gagggaattgaagattgcatgatctgtttttcagtcatacatggttccaattattctctt
cccaaaaaagcctgtagaacatgcaagaaaaaattccattcagcctgtttgtacaaatgg
ttcacatctagcaacaaatccacctgcccactttgtcgagagacctttttttga
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integrated database retrieval system
