Emys orbicularis (European pond turtle): 135886623
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Entry
135886623 CDS
T11511
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
eob Emys orbicularis (European pond turtle)
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eob03016
]
135886623 (RTCB)
Enzymes [BR:
eob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
135886623 (RTCB)
Transfer RNA biogenesis [BR:
eob03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135886623 (RTCB)
Prokaryotic type
tRNA splicing ligases
135886623 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
135886623
NCBI-ProteinID:
XP_065270468
LinkDB
All DBs
Position
1:102310553..102327896
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNSWRIKKGFVPNMNVEGVFYVNEPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMSDPDAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagctggacaagaacagctgg
aggatcaagaagggcttcgtgcccaacatgaacgtggaaggagtgttttatgtaaatgag
ccgctagagaaattaatgtttgaggagttacgaaatgcctgcagaggtggaggtgctggt
ggattcttgccggccatgaaacagattgggaatgtggctgcactacctggcattattcat
agatctattgggcttcctgatgtacattctggctatgggtttgccattggtaacatggca
gcatttgacatgagtgacccagacgcagtggtgtcaccaggtggtgtcgggtttgacatc
aactgtggtgtccgattgctgcgtacgaatctagatgaaagtgacgtccagcccgtgaag
gaacagctcgcccaagccatgtttgaccatattccagttggcgtgggctccaagggtgtc
atccccatgaatgccaaggacttggaggaggccctggagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaaggatgctg
caggctgatcccaataaggtctcctcaagagctaagaaaagaggtttgcctcagctgggg
accctgggagcaggaaaccattacgctgagatccaggtggtggatgacatttataacgag
tatgctgccaggaagatgggcattgatcacaagggacaggtgtgtgtaatgatccacagc
ggcagcagaggtctgggccatcaagtagctacagatgctttagtggctatggagaaagcc
atgaaacgggacaagatcatagttaatgatcgccagttggcatgcgccagaattgcctcc
ccagagggacaggactacctaaagggaatggcagcggctgggaactatgcatgggtcaac
cgctcttccatgactttcctaaccagacaggccttcgctaaagtcttcaacacaacccct
gatgacctagatcttcatgttatctatgatgtgtctcataacattgccaaagtggagcag
catgtggtggatggaaaagagcggaccctgctggtgcacagaaagggatcgaccagggct
ttccctcctcatcatcctctcattgctgttgattaccaactgactggacagccagtactg
attggtgggacaatgggaacctgtagctatgttcttactggtactgaacaaggcatgacc
gagacctttggaaccacatgccatggagctggtcgtgcattgtcccgagcaaaatctcga
cgaaacttggacttccaggatgtgttggacaagctggctgacatggggatcgcaatccgt
gttgcttcccccaagctggtcatggaagaagcaccagaatcctataaaaatgtgacagat
gtggttaacacctgccatgctgctggcatcagcaagaaagctattaaattgagacctatc
gctgttattaaaggctag
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