Emys orbicularis (European pond turtle): 135887868
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Entry
135887868 CDS
T11511
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03013
Nucleocytoplasmic transport
eob03015
mRNA surveillance pathway
eob03040
Spliceosome
eob05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135887868 (ALYREF)
09122 Translation
03013 Nucleocytoplasmic transport
135887868 (ALYREF)
03015 mRNA surveillance pathway
135887868 (ALYREF)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
135887868 (ALYREF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eob03019
]
135887868 (ALYREF)
03041 Spliceosome [BR:
eob03041
]
135887868 (ALYREF)
Messenger RNA biogenesis [BR:
eob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135887868 (ALYREF)
TREX complex
135887868 (ALYREF)
Spliceosome [BR:
eob03041
]
Complex C
Other components
EJC/TREX
135887868 (ALYREF)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135887868 (ALYREF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
F07F6_N
Motif
Other DBs
NCBI-GeneID:
135887868
NCBI-ProteinID:
XP_065271721
LinkDB
All DBs
Position
13:complement(50293599..50302159)
Genome browser
AA seq
258 aa
AA seq
DB search
MADKMDMSLDDIIKLNRSQRGAGRAGGGRGGRGRGGAARGGGPGRGSVGAGRAGGGGPLR
NRPIMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAGAGVETGGKLLVSNLDFGVSDA
DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL
VTSQIDTQRRPAQSVIRGGMTRNRGGSGGFGGGGGNRRGNRGGNRGRGRGAGRSSKQQLS
AEELDAQLDAYNARMDTS
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaagatggacatgtccctggacgatatcatcaagctgaaccgcagccagcgg
ggggccggtcgcgccgggggcggccgcggaggccggggccgaggaggcgccgcccgcgga
ggggggcccggccggggcagtgttggcgccgggcgagcaggaggcggcggccccctgcgg
aacaggccgatcatggcccgaggcggcggcaggaaccggcccgcgccctacagccggcca
aagcaactccccgaaaagtggcagcatgacctgtttgacagcggctttggggctggggca
ggcgtggaaactggggggaagctcctggtttctaatctggactttggtgtgtcggatgca
gatatccaggagctctttgcagagtttgggactttgaagaaggcagcggtgcattatgat
cggtctggacgcagtttagggacagcagatgtgcattttgaaagaaaggcagatgctctg
aaagctatgaagcagtacaatggagtccccctggatgggcgccctatgaacattcagctg
gttacatcacagatagacacacagcggagaccagcacagagtgtaatcagaggaggcatg
accagaaaccgtggtggttcaggaggatttggtggtggaggtggcaacaggcgaggtaac
cgtggtgggaaccgagggagaggcagaggggctggaagaagttccaaacagcagctctct
gcagaagaactagatgcacagttggatgcttataatgccaggatggacaccagttaa
DBGET
integrated database retrieval system
