Emys orbicularis (European pond turtle): 135887886
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Entry
135887886 CDS
T11511
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03013
Nucleocytoplasmic transport
eob03015
mRNA surveillance pathway
eob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135887886 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
135887886 (DDX39B)
03015 mRNA surveillance pathway
135887886 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eob03019
]
135887886 (DDX39B)
03041 Spliceosome [BR:
eob03041
]
135887886 (DDX39B)
Enzymes [BR:
eob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135887886 (DDX39B)
Messenger RNA biogenesis [BR:
eob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135887886 (DDX39B)
Spliceosome [BR:
eob03041
]
Complex C
Other components
EJC/TREX
135887886 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135887886 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
135887886
NCBI-ProteinID:
XP_065271743
LinkDB
All DBs
Position
13:1078409..1088408
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENQAAGDGVDVPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggataacgagctgctggattacgaggatgacgaggtggagaac
caggcggccggcgacggggtggacgtgccccccaagaaggacgtcaagggctcctacgtc
tccatccacagctccggcttccgggactttctgctgaaacccgaactcctccgcgccatc
gtcgactgcggcttcgagcacccctcggaagtgcagcacgagtgcatcccgcaggccatc
ctgggcatggacgtgctgtgccaggccaagtcgggcatgggcaagacggccgtcttcgtg
ctggccacgctgcagcagctggagcccgtcacggggcaggtgtcggtgctggtgatgtgc
cacacgcgggagctggcgttccagatcagcaaggaatacgagcgcttctccaagtacatg
cccagcgtcaaggtggcggtgtttttcgggggcctgtccatcaagaaggacgaggaggtg
ctgaagaagaactgcccccacatcgtggtggggacgccgggccggatcctggccctggcg
cgcaacaagagcctcaacctcaagcacatcaagcacttcatcctggacgagtgcgacaag
atgctggagcagctcgatatgcgccgggacgtccaggagatcttccgcatgaccccgcac
gaaaagcaggtcatgatgtttagcgccaccctgagcaaggaaatccgccccgtctgccgc
aaattcatgcaagaccccatggagatcttcgtggacgacgagacgaagctgacgctgcac
ggcctgcagcaatactatgtcaagctgaaggacaacgagaagaaccgcaagctcttcgac
ctgctcgacgtgctggagttcaaccaggtggtgatcttcgtcaagtcggtgcagcgctgc
atcgcgctggcccagctgctggtggagcagaacttcccggccatcgccatccaccggggc
atgccccaggaggagaggctgtcccgctaccagcagttcaaggatttccagcgccggatc
ctggtggccaccaacctctttgggcgggggatggacatcgagcgggtcaacatcgccttc
aactacgacatgcccgaggactcggacacctacctgcaccgggtggcgcgcgctgggcgg
ttcggcaccaagggcctggccatcacctttgtgtcggatgagaacgacgccaagatcctg
aacgacgtgcaggatcgcttcgaggtgaacatcagcgagctgcccgacgagatcgacatc
tcctcctacatcgaacagacccgataa
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