Emys orbicularis (European pond turtle): 135887898
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Entry
135887898 CDS
T11511
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
eob Emys orbicularis (European pond turtle)
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
eob04121
]
135887898 (PDZRN4)
Enzymes [BR:
eob01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135887898 (PDZRN4)
Ubiquitin system [BR:
eob04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
135887898 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
Sina_ZnF
zf-C3HC4_4
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-TRAF
zf-rbx1
PDZ_Tricorn
TRAF3_RING
zf-RING_6
IBR_1
Motif
Other DBs
NCBI-GeneID:
135887898
NCBI-ProteinID:
XP_065271759
LinkDB
All DBs
Position
1:57326798..57702211
Genome browser
AA seq
1062 aa
AA seq
DB search
MGFDLDRFAEPVDPDLKCKLCSKVLEEPLSTPCGHVFCAGCLLPWAVQRRLCPLQCQPIS
AKELHQVLPLRSLIQKLEIKCDYSPRGCGRTVRLHQLAAHVEMCDYSPARCRHKGCPEVL
SLKDVDAHMRESCEHRPAGICQQGCGLVLLQRDRAGGAQPGGGHCCLRALRSQNSSLQGQ
RASLEQELKRQALKWSQREKSLLAQLAALQSEVQLTALRYQVKFNQYMSHISSITRNLAG
SHPCKGGESKPLTIMLQRENDTLGFNIVGGRPNQNNQEDSSPEGIYVSKILENGPADKTE
GLQIHDKIIEVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRAPINKTHGSSQDVQLVDA
STQTDITFEHIMALAKLRPSTPPVPDICPFLLSDSCHSLHPVEHEFYEGNEYLSSLPADA
DRTEDFEYEEVELCRVSSQEKLGLTVCYRTDDEEDTGIYVSEVDPNSIAARDGRIREGDR
ILQINGQDVQNREEAVALLSSDECKKIVLLVARPEMQLEEGWLDDERNEFLEELNLEMLE
EQHNEVMQFTANEVEQPKKHEEEDGTTDTATSSSNNHEKDSGVGPTDESLRNDESSEQEN
APDEQNKMTLQSTRELGQSQDTLGSIELQCNESFVSGEYIESDFIGNQDEECERFRQLLE
LKCKIRNHGEYDLYYSSSTIQCNRREQDGVEHELQLLNEELRNIELECQNIMQAHRLQKV
KDQYGDIWALHDGGFRNYNTSIDVQRGKLDDIIEHPEKSDKDSSSAYNTAESCRSTPLTV
EQSPDSSLQRMISITNRKNLRSTIVANQLCPGQSGREVTPSKTTEQNSTVEEKETVAESS
NFTEQEKQSTEHIPYLSPYHSSSYRYGNIPAHAKHYQSYMQLIQQKSAVEYAQSQLSLVS
MCKDSQKCTEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSE
MKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEINILELSHKK
MMKKRNKKILDSWMTIQELMTHGAKSPDGTRVHNAFLSVTTV
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgacctggatcgctttgccgagcccgtggacccggatctcaagtgcaaactg
tgcagcaaggtgctggaggagccgctgtccacgccgtgcgggcacgtcttctgcgccggc
tgcctgctgccctgggcggtgcagcggcgcctgtgccccctgcagtgccagcccatctcg
gccaaggagctgcaccaggtgctgccgctcaggagcctcatccagaagctggagatcaag
tgcgactacagcccgcggggctgcggccggaccgtgcggctccaccagctggccgcccac
gtcgagatgtgcgactacagcccggcccggtgccgccacaagggctgcccggaggtgctc
agcctgaaggacgtggacgcgcacatgcgggagagctgcgagcaccgcccggccggcatc
tgccagcagggctgcggcttggtgctcctgcagcgggaccgggcggggggcgcgcagccg
ggcggggggcactgctgcctgcgggcgctacgcagccagaacagcagcctgcaaggccag
agggccagcctggagcaggagctgaagcgacaggccctgaagtggagccagagggagaag
tcgctgctggctcagctcgcggcgctgcagagcgaggtgcagctcacggcgcttaggtac
caggtgaagttcaaccagtacatgagccacatcagcagcatcaccaggaacctggccggc
agccacccctgcaagggaggagaatctaagccattaaccatcatgctacaaagagaaaat
gatactttgggattcaatattgtaggaggacgacccaatcagaacaatcaggaggactct
tcacctgaaggaatttatgtgtcaaaaatcttggaaaatggacctgctgacaagacagaa
ggcctgcaaattcatgacaagatcattgaggtcaatgggaaggacctctcgaaggccact
cacgaagaggcagtggaagcttttcggaatgccaaggagccaattgtagttcaggtttta
cggagagcacccattaataaaacacatggtagctcacaggatgttcagcttgtggatgct
agcactcagaccgacatcacctttgagcatattatggctctggccaagcttaggccatcc
acacctccagtaccagatatctgtccctttctgctttcagacagctgccattctcttcac
ccagtggagcatgaattttatgaaggtaatgagtatctttccagcctgcctgctgatgca
gatagaacagaggactttgagtatgaggaggtcgagctgtgtcgtgttagcagtcaagag
aagctggggctgactgtctgctacagaacagatgatgaggaagacacaggaatctatgtc
agtgaggttgatccaaacagcattgctgccagagatggccggatccgagaaggagaccgc
attctgcaaataaatggccaagatgtccagaatcgggaggaggcggtggcattgctctcc
agtgatgaatgcaagaaaattgtgttgctggttgcaagaccagagatgcagctggaggag
gggtggctggatgatgaaaggaatgaattcttagaggagttaaacttggaaatgttggaa
gaacagcataatgaagtaatgcagttcacagccaatgaggtggagcagccaaaaaagcat
gaggaggaggacggcacaacagacactgcaacctcgtcatccaataaccatgagaaggac
agtggagtggggcctacagatgagagtctgcgtaatgacgagagctcagagcaggagaat
gcacccgatgagcagaacaaaatgaccctgcaaagcacccgggagctggggcagagccag
gatacgttaggaagcattgaactccagtgcaatgaaagctttgtgtcgggggaatacatt
gaatctgatttcattggaaaccaagatgaggagtgtgaaaggttccggcagctgctggag
ctcaagtgcaagattagaaaccacggagagtatgatctgtattactcgagcagtacaata
cagtgtaacagaagggagcaagatggggtggagcatgagctacagttactcaatgaggaa
ctgagaaatattgagcttgagtgtcagaatataatgcaggctcacaggcttcaaaaggtg
aaggatcagtatggagacatttgggcattacatgatggaggattcaggaattataacacc
agcatagatgtacaaagaggtaaactggatgatatcatagagcacccagagaaatctgac
aaagacagctctagtgcttacaacacagcagaaagctgcaggagcactccactgactgta
gagcagtcccctgatagctcgctccagagaatgatcagcatcaccaacaggaaaaacctg
agaagcacaattgtagctaatcagttgtgtcctggacagagtggtagggaggtaacccca
tccaaaaccactgagcaaaacagcactgttgaagagaaggaaacggttgcagagagtagc
aatttcacagagcaggagaagcaaagcactgagcacattccttacctatctccatatcat
agctcttcataccggtatgggaatatacctgctcatgcaaagcattatcaaagctatatg
cagctgatccaacagaaatccgcagtggagtatgcccaaagtcagctcagtctagtgagc
atgtgcaaagattcacagaagtgtacagagcccaaaatggaatggaaagtgaaaataagg
agtgatggaacaaggtatatcactaagagaccagtgcgagacagaatcctgaaggaacgt
gccttaaagattaaagaggagcgcagtgggatgacgacagatgatgatacgatgagcgaa
atgaagatgggtcgttactggagcaaagaggagcggaagcagcatttggtgcgagccaag
gagcagaggcggcggcgagagttcatgatgcggagcaggttagagtgtcttaaggaaagt
ccacagagcggcagcgagggcaaaaaagaaattaacattcttgaacttagtcacaaaaag
atgatgaaaaaaagaaacaagaaaatcttggacagctggatgacaatccaagaactgatg
acacatggtgctaagtctccagatgggacaagagtgcacaatgcctttttatcagttact
actgtatga
DBGET
integrated database retrieval system
