Emys orbicularis (European pond turtle): 135891189
Help
Entry
135891189 CDS
T11511
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135891189 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eob03019
]
135891189 (NUP188)
Messenger RNA biogenesis [BR:
eob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
135891189 (NUP188)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
135891189
NCBI-ProteinID:
XP_065274749
LinkDB
All DBs
Position
18:complement(13131511..13179788)
Genome browser
AA seq
1737 aa
AA seq
DB search
MAAGGLCARSSRELWTILLGRSALRESAQIAAELNKHWQRLLEGLSYYKPPSASSAEKVK
ANKDVAAPLKELGLRISKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQALM
LKLADYYYEERMCILRCVLNLLTYFQDERHPYMAQYSQCVEKLDKELVPNYRKQFEDLYK
AEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEVIFLYYAYFEMAPDELLTFARLFKEQ
GFGSRQTNRHLVDESMDHLVDRIGYFSALILVEGMEIDSLHERVLDDRTEEHKFASNGRM
HQEMDHLLLTLGDISHHAPVLLAWALLRHTVTPEESTNAIRRMGSTAIQLNIFQYLTKLL
RSLSSGGKNCTASTACMCIYGLLSFVLTSLELHTLGNQQDIIDAACEVLAASSIPQLFWR
TEPTAGLGIILDSVCGMFPHLLSPLLQLLKALVSDKSTAKKVYSFLDKMSFYIELYKHKP
PDVISHEDGTLWRRQVPKLLYPLGLGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTL
FTCEIEMLLHVVSTADVIQHCQRVKPVIDLVHKVISTDVSIADCLLPITSRIYMLLQRLT
SVISPPVDVIASCVNCLTVLAARMPAKVWTDLHHTGFLPFVANPVSSMSHMISAEGMNAG
GYGNLLMSVEQPQGEYGVTISFLHLVTTLVRGQLGSTQSQGLMPCIVFVLKEMLPNYHKW
RYNSHGVRERIGCLILQLIHAILNLCPEMDPHSSNAPSLQSLCIFSLANTEAGQAVINIM
GIGVDTIDMVMASQSCSDESLGQGQLLIQTVKLAFSVTNNVIRLKSPSSVVSPLEQALTQ
HGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFLT
RLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGEWSCLQVVL
ELIDSKQQERYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTNPLFGTLSP
PSETSELSVLDTCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSTEKRFAYWSGYVKSLA
LHMAETEGSSCTSLTEYQMLISAWRMLLIISTNHADIMHLTESAVRQQLFLEVLSGTKAL
LLVPMSVLCLQLGSMLCTLLLILLRQWKSELGSVDKIINSLTQILEGVLQADQQMMEKTK
AKVFSALITVLQMKEMKVSEIPQYSQLVMSVCETLQDEVIVLFDQTRHSLTSGDSADDKD
SMETDDACRGKHKDQRDGVCVLGLHLAKELCEVDEDGDYWLQVTRKVPMLPTIFTALEIS
LRVKQNLHFTEASLHLLLTLARTQQGAAAVASAGVTQSICLSLLSVYQLSTNGTIQTPVS
SRKSLDAPSWPGVYRLSISLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRTVQSL
ACLEEADHTVGFILQLSNFMKEWHFHLPQLLRDIQVNLCYLCQACTSLLHSRKMLQHYLQ
TKNGDSLPSAVTPRVQRTPQTSSKHPSPESEAAEQKALRTVQYGLLKILSKSLAALRHFT
PDVCQILLDQSLDLAEYNLLFVLSFTTPAFDSDVAPSFGTLLATVNVALNMLGELDKKKE
PFAQAAGLNTQEETKTLKSLLMFTMENCFYLLISQAVRYLRDPAVHPRDKQRMKQELSSE
LSTLLSSLSRYFRRGGPSSPASGVLPSPQGKSASKIGPEGQEPLIQLVQAFVRHVQR
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggcgggctgtgcgcgaggagcagcagagaactgtggaccattctgctgggc
agatcggctttgagggaatctgctcagattgcagcagagttgaacaagcattggcagagg
ctactagaggggctttcatactacaaacctcccagtgcaagttcagctgaaaaagtaaaa
gctaataaagatgtggctgctccactgaaggaactgggcctgaggatcagcaagtttttg
gggctggatgaagagcaaagtgtgcagttattgcagtgttatcttcaagaggattacaga
gggacccgggactcgcttaagactgtcctgcaggatgaaaggcagagtcaggctctgatg
ttgaagcttgctgactattactatgaagaaagaatgtgcattctgcgctgtgtcctcaac
ctactcacttattttcaggatgagaggcacccctacatggcacaatactcacagtgtgtt
gagaagctggacaaggaactggttcctaattaccggaaacagtttgaagatctatacaaa
gcagaagctcctacatgggaaacgcatggaaatctcatgacagagcgccaggtgtcccgc
tggtttgtgcagtgcctccgcgagcaatccatgcttctagaagtcatcttcctttactat
gcatactttgagatggcacctgatgagctgctgacctttgccaggcttttcaaagaacag
ggatttggctctagacagaccaacaggcatttggtggatgaaagcatggatcacctggtg
gatcgtattggctacttcagtgctcttatcctggtggagggcatggaaattgactccctg
catgagcgtgtgttggatgataggacggaggaacataaatttgccagtaatgggcgtatg
caccaggaaatggaccatctgctgctgactttaggggacatctctcatcatgcccctgtg
ctcttggcctgggctttgctccgtcacacagtaaccccagaggagtcgaccaatgcgatc
aggcgaatgggaagtactgctatccagctgaatatattccagtacctgacaaagctgcta
cgatcactcagcagtggggggaagaattgtactgccagcacagcttgcatgtgtatttat
gggctgctttcctttgttctgacctcgctggaattacatacgttaggcaatcagcaggac
atcattgatgcagcctgtgaagttctagcagcttccagcattccacagctcttctggagg
acggagccaaccgcaggtctgggtattatcctggacagtgtgtgtgggatgttcccacat
cttctctctcctcttctgcagctgctcaaagcccttgtatcagataaatctactgcaaaa
aaggtgtacagtttcctggataaaatgtccttctacattgagttgtacaaacacaagccg
cctgatgtgatctctcatgaagatggcaccctttggagaaggcaggtgccaaagcttctc
tatcccctggggctgggccagacaaacctacgaatacctcagggaacagtgggccaggtg
atgctggatgaccgggcatatttagtacgatgggaatattcctacagcagctggacattg
ttcacctgtgaaattgagatgctgctccatgttgtatcgacagcagatgtgattcagcac
tgccagagggtgaagccagtcattgacctggttcacaaggtcatcagcaccgatgtgtca
atagcagattgtcttctgccaatcacatcacggatctacatgctgttacagaggttaaca
agtgtgatctctcccccagtggatgttattgcttcttgtgtcaattgtttgactgtattg
gctgcccgcatgccagctaaggtctggactgatcttcaccacacagggttcttaccattt
gttgccaatccagtttccagtatgagtcacatgattagtgctgagggaatgaatgctggg
ggctatggaaacctgttgatgagcgtggaacagcctcagggcgagtatggtgtcaccatc
tccttcctacacttggtcacaactcttgtccgtgggcaacttggcagcacccagagccaa
gggctgatgccctgcattgtatttgtgctgaaggaaatgttaccaaactaccacaaatgg
cgctataactcccatggagtgagagaacgaattgggtgcctaatcctgcagctcatccat
gctattctgaatctctgccctgaaatggatcctcacagcagcaatgctccaagcctgcag
tccttgtgcatcttcagcctggccaacacggaagcaggacaggctgtcattaacatcatg
ggcatcggtgtggacaccattgatatggtaatggcctcacagtcctgtagcgatgagtca
ctgggccagggccagctgctgatccagacagtaaagctggcgttctcggtcaccaataac
gtcatccggttgaaatccccttctagcgtggtatccccactagaacaggcacttactcag
catggtgctcatgggaacaatctgatcgctgtcttagccaaatatatctaccacaaacac
gacccagcactgccacgccttgccatccagctgctcaaacgactcgctacggtggcgcca
atgtctgtttacgcctgccttgggagtgatgctgctgccattcgtgatgcctttttgacc
cgcctgcagagtaagattgaggacatgcgcattaaagtcatgatcctggagttcctcact
gttgctgtagagacacagcctgggctcattgagctgttcctgaacctggaagtgaaagat
gggagtgatgggtcaaaggaattcagcttaggggaatggagttgcctccaagtggttttg
gaactgatagactccaaacagcaggaaagatactggtgccctcccctcttgcaccgggct
gcaattgcattccttcatgctctgtggcaggaccgtcgggatagtgccatgctggtcctg
aggaccaagccaaagttttgggaaaacttaaccaaccccctctttgggaccctttctccc
ccctcagaaacatcagagctcagtgtcttggacacttgtgccttaatcatgaaaatcatc
tgcctggagatctactatgtggtcaagggctcactggaccagtccctgaaagacaccctg
aagaagttctccacagaaaagcgctttgcttactggtcaggatatgtgaagtcattggca
ttgcatatggcagaaacagagggtagcagctgcacctccttgacggagtatcagatgctg
atctcggcctggcgaatgctgctgattatctccaccaatcacgcagatataatgcatctg
actgaatctgcagtccggcagcaactgtttctggaggtgctaagtgggaccaaagcttta
ctgctggtccccatgtcggtgttgtgcctgcagctggggtccatgctgtgcacccttctg
ctgatcctgctgagacagtggaagagcgagttgggttctgtggataaaatcataaactcc
ttgacgcagattctggagggagtgctgcaggcagatcagcagatgatggagaagaccaag
gccaaggtgttctctgctctcatcactgttctgcagatgaaggagatgaaagtgagcgag
atccctcagtactcccagctggtgatgagcgtgtgcgagaccctccaagatgaagtaatt
gtgctctttgatcagacacgacacagcctcacgtctggagactctgcagatgacaaggac
agcatggaaacagatgatgcctgccgtggtaaacacaaggaccagcgagatggggtgtgt
gttctagggctgcatctggcaaaggaactctgtgaagtagatgaagatggagattactgg
ctgcaggttactaggaaggtccctatgctgcctactatcttcactgccctagagatcagc
ctgagagttaaacaaaaccttcacttcacagaagcctcattgcatctactgctgacctta
gccaggacgcaacagggtgcagcagctgtggctagtgctggtgtcacacagagcatctgt
ttgtccctcttgagcgtataccagctcagcactaatggaacaattcagacacctgtttca
tctcggaagtctctggatgccccatcctggcctggggtctatcgtctctccatatcattg
atggagcgccttcttaagacactaaggtacaacttcctgacagaggcactggactttgtg
ggtgtccatcaggagaggattcttcagtgcctgaatgcagtacggacagtgcagagcctg
gcctgtctggaagaagctgaccacactgttggcttcattcttcagctctccaactttatg
aaagagtggcatttccaccttccgcagctcttgagggacatacaggtgaacttgtgttac
ctctgccaggcttgtacctcccttctgcatagccgcaaaatgcttcagcactacctgcag
acaaaaaatggtgactccctcccatcagctgtgacacctcgagtgcaacgcaccccccag
acctcctccaagcatccaagccctgagtcagaggcagccgagcagaaggcactgcgtaca
gtgcagtatggtctcttgaaaatcctcagcaaatctctagctgccctacgccacttcacc
cccgacgtctgccagatcctcctcgatcagtcactggacctggctgagtacaaccttctc
tttgttctgagttttacaacacctgccttcgattcagatgtcgctccctcctttgggacc
ctcctggccactgtcaacgtcgcccttaacatgctgggagagctggataagaagaaagag
ccctttgctcaagctgcagggctgaatacacaagaggagactaaaactcttaagtctttg
ctcatgtttacaatggaaaactgtttctacctgctcatctcccaggctgttcggtatttg
agggacccagcggtgcatccacgagacaagcagcggatgaagcaggaactcagctccgag
ctgagtacactgctctcaagcctgtctcgttactttcgccggggcggcccctcttctcca
gccagtggagttcttccctccccccagggaaagtctgcctccaagattggccctgagggg
caggagcctttgatccagctggtacaagcctttgtcagacatgtgcagagatag
DBGET
integrated database retrieval system
