Emys orbicularis (European pond turtle): 135891701
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Entry
135891701 CDS
T11511
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob04510
Focal adhesion
eob04512
ECM-receptor interaction
eob04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135891701 (COL2A1)
04518 Integrin signaling
135891701 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135891701 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
eob00536
]
135891701 (COL2A1)
Glycosaminoglycan binding proteins [BR:
eob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135891701 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
135891701
NCBI-ProteinID:
XP_065275403
LinkDB
All DBs
Position
19:complement(19089369..19154320)
Genome browser
AA seq
1492 aa
AA seq
DB search
MFSFVTSRTVVLLAATQVILLAVVRCQDEDIQEAGSCVQHGQRYSDKDVWKPEPCRICVC
DTGTILCDEIICEEMRDCPSPEIPFGECCPICPTDQPACSNSSCFALQGQKGEPGDIKDV
VGPRGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPAGPPGPPGL
GGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGS
SGPMGPRGPPGPPGKPGDDGEAGKPGKSGDRGSPGPQGARGFPGTPGLPGVKGHRGYPGL
DGSKGEAGAAGAKGEAGSPGENGSPGPMGPRGLPGERGRPGSSGAAGARGNDGLPGPAGP
PGPVGPSGAPGFPGGPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGAPGNPGTDGI
PGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGDPGIAGFKGEQGPKGESGP
AGPQGAPGPAGEEGKRGGRGEPGAAGPVGPPGERGSPGNRGFPGQDGLAGPKGAPGERGP
AGLGGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGTAGEDGRPGPPGPQGA
RGQPGVMGFPGPKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGASGPPGPAGPAGERGE
QGSPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGSPGSQGL
QGARGLPGTPGTDGPKGATGPSGPTGAQGPPGLQGMPGERGAAGISGPKGDRGDIGEKGP
EGAPGKDGGRGLTGPIGPPGPSGPNGEKGESGPPGPSGAAGARGAPGDRGEPGAPGPAGF
AGPPGADGQPGAKGEQGESGQKGDAGAPGPQGSSGAPGPQGPTGVTGPKGARGAQGPPGA
TGFPGAAGRVGPPGPNGNPGPAGPPGASGKDGPKGARGDGGPPGRSGDPGLQGPAGAPGE
KGESGEDGPPGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGD
RGPPGPVGPPGLTGPSGEPGREGTPGSDGPPGRDGAAGVKGDRGETGAVGSPGAPGPPGS
PGPVGPTGKQGDRGESGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGF
TGLQGLPGPPGTSGDQGATGPSGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGE
TGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQVEKGPDPMRYMRADQASSDLRQHDVEV
DATLKSLNNQIESIRSPEGSKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAIKVFC
NMETGETCVYPNPSSIPKKHWWTSKTKEKKHIWFGETINGGFHFSYGDDNLAPNTANIQM
TFLRLLSTEGSQNITYHCKNSIAYMDEASGNLKKAILIQGSNDVEIRAEGNSRFTYSALV
DGCTKHTGKWGKTVIEYRSQKTSRLPIIDVAPMDIGGADQEFGVDIGPVCFL
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtgacttcaaggactgtagtgctgctcgcagccacccaggtcatttta
ctagccgttgtcagatgtcaggatgaggatatccaggaggcaggcagctgtgtgcagcat
gggcagaggtatagtgataaggatgtgtggaaacccgagccctgccggatctgtgtctgt
gacactgggactatcctctgcgacgagataatctgcgaagaaatgagagactgtcccagc
cccgagatccccttcggagaatgctgccctatctgcccaactgaccaacctgcttgttct
aattccagctgctttgcattgcagggacaaaaaggggaacccggtgatattaaagatgtc
gtaggaccaagaggaccacctggaccacagggacctgcaggggaacaaggaccaaggggc
gaccgtggggataaaggagaaaaaggtgctcctggccctcggggtagagatggcgaacct
ggtacccctggaaaccccggacccccagggcccgcgggtcccccagggccccctgggctt
ggcggaaactttgctgctcaaatggccggaggattcgacgagaaggctggtggcgctcag
ttgggtgtgatgcagggacctatgggacctatgggaccgcgaggacctccgggaccatcg
ggagctcctggccctcaaggatttcaaggcaaccctggagagcctggggaacctggatct
tctggtccaatgggtccccgagggcctcccggaccccctggaaaacccggtgatgatggt
gaagcaggcaaacccggcaaatctggtgatcgcggatcccctggccctcagggtgcgcga
ggcttcccaggaaccccaggtctcccaggagtcaaaggtcacagaggttaccctgggtta
gacggctccaaaggagaagcaggagctgccggtgctaagggcgaagctggatcaccgggt
gagaatggttctcctggtcccatggggccccgtggtctcccaggcgaaagaggacgtcct
ggctcatccggtgctgctggtgctcgtggcaacgacggtctccctggcccagccggtccc
cctggacccgtcggcccctccggagctcctggattccctggcggcccaggctctaagggg
gaagctggccccactggcgctcgaggccctgagggtgcccaaggccccagaggtgaatct
ggcactcccggctcccccggaccttcaggggcacccggtaaccctggaactgacggcatc
cctggcgctaaaggatcagctggcgctcctggaattgctggtgcccccggcttccctggg
ccacgtgggcctcctgggcctcaaggtgcaactgggcctctgggtcccaaaggtcagacg
ggagaccctggcattgcaggcttcaaaggcgaacaaggccccaaaggtgaatctggcccc
gcagggccacagggagcacccggcccagctggcgaagaaggcaagagaggtggccgtggt
gagcccggtgctgctgggcctgtcggaccccctggagagagaggctctcctggaaaccgc
ggcttcccaggtcaggatggtctcgctgggcccaagggtgcccctggcgagcgtggtccc
gctggccttggggggcctaaaggagccactggtgatcctggacgtcccggagaacccggc
ctgcccggcgctaggggtctcactgggcgcccgggcgatgctggtcctcaaggcaaagtc
ggtccgactggtaccgctggtgaggacggtcgcccgggtccaccgggcccccaaggtgct
cgcgggcagcctggcgtcatgggtttcccagggccaaaaggtgctaacggcgaggctggt
aaagctggagagaaaggattgcccggcgcccctggtctgagaggtcttcctggcaaagat
ggtgagacaggagcttccggcccccctggacctgccgggcctgctggcgagaggggtgaa
cagggctcgccaggtccttctggcttccagggacttcccggccccccaggtcctccaggc
gaaggtggcaagccaggagatcagggcgtccccggcgaagctggcaccccaggcctcgtg
ggtccccgaggtgaacgtggcttcccgggtgaacgtggctctccaggttcacaaggtctg
cagggcgctcgagggctccccggaactcctggtaccgacggacccaagggtgcgactggt
ccatccggccctactggtgcccaaggtccccccggtctgcaggggatgcctggtgagagg
ggagcagctggtatttccggaccaaagggagacaggggtgatatcggtgagaaaggccca
gaaggcgctcccggcaaggacggcggaagaggtttgacaggtccgatcggtccccctggc
ccttctggccccaacggcgagaagggtgaatcgggtcccccaggcccatctggtgctgcc
ggtgcccgcggcgccccgggtgaccgtggcgagcctggagcccccggccctgctggattt
gctggacctcccggcgctgacggccaacccggcgctaaaggtgaacaaggagaatctggc
cagaagggagacgctggggccccgggtccacagggttcttccggtgctcctggcccacag
ggtcccactggtgtgactggtcctaagggagctcgaggtgcgcagggaccccctggagcc
accggatttcctggcgctgcaggacgtgtcggccctcccggccctaacggtaacccaggc
ccagctggcccaccaggtgcttctggcaaagacggtcccaagggtgctcgtggtgatggg
ggcccaccgggccgttctggtgaccctggtctccaaggccctgccggtgcccctggtgag
aagggcgagtccggggaagatggcccacctggtgccgatgggccacctggtcctcaaggt
ttggcaggccagcgaggtattgtcggtcttcccggccagcgtggtgagagaggtttcccg
gggctgccgggtccctccggtgagcctggcaaacaaggagcccctggaggtgccggcgac
cgagggccacctggtcctgtgggtcccccaggtctgactggtccctctggtgaacctggg
cgcgagggcacccccggatctgatggcccccctggcagagatggggcagctggagtgaag
ggtgatcgcggtgagactggtgctgtcggttctcctggtgctcccgggcctcctggctcc
ccgggtcctgttggtccaactggcaaacagggagacagaggagaatctggcgctcaaggc
cccatgggtccctccggccccgcaggcgcacgcggcatgccgggtcctcaaggtcctcgc
ggtgacaagggcgaagctggagaggctggtgagaggggtctgaagggtcaccgaggattc
actggtttgcagggtcttcctggaccccccggtacatctggagatcaaggtgctactggt
ccttctggtccttctggtcccaggggtcccccaggccctgttggtccctctggcaaagat
ggttcaaatggcatgcccggtccgattggtcctccaggtcctcgcggtcgtagtggtgaa
accggacctgctggtccccctggaaaccctggaccccctggacctcccgggcccccaggc
cccggcattgacatgtcagccttcgccggtttgggccaggttgagaaaggccctgaccct
atgcgctacatgcgagctgaccaggcctctagcgacctgcgccagcatgatgtcgaggtc
gacgccactctgaaatccctcaacaaccagatcgaaagcatccgcagccccgagggctcc
aagaagaacccagcccggacctgccgtgaccttaaactctgccaccccgagtggaagagt
ggtgactactggatcgaccctaaccagggctgtaccttggatgccattaaggttttctgt
aacatggagactggtgagacatgcgtctatcccaacccctccagcattcccaagaagcac
tggtggaccagcaagaccaaggagaagaagcatatctggtttggagagaccatcaatggt
ggattccactttagctatggagatgacaacctggcccctaacactgccaacatccagatg
accttcctgcgcctcctgtccaccgaaggctcccagaacatcacctaccactgcaagaac
agcattgcctacatggacgaggcttccggcaacctgaagaaagccatcctgatacaggga
tccaatgacgtcgagatcagagccgagggaaacagcagattcacatacagtgccttggtg
gatggctgcacgaaacacactggcaaatggggcaaaacagtcattgaataccgatcacag
aagacctcgcgcctgcccatcattgatgttgcacctatggacattggtggagccgatcag
gagtttggcgttgacattgggccagtctgctttttgtaa
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