Emys orbicularis (European pond turtle): 135891768
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Entry
135891768 CDS
T11511
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135891768 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eob03019
]
135891768 (XAB2)
03041 Spliceosome [BR:
eob03041
]
135891768 (XAB2)
Messenger RNA biogenesis [BR:
eob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135891768 (XAB2)
Spliceosome [BR:
eob03041
]
Complex B
Other components
Prp19-related factors
135891768 (XAB2)
Complex C
135891768 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_16
RPN7
TPR_1
LTN1_E3_ligase_6th
NRDE-2
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
135891768
NCBI-ProteinID:
XP_065275504
LinkDB
All DBs
Position
19:complement(10920078..10935871)
Genome browser
AA seq
858 aa
AA seq
DB search
MPELEETPVAAGEGKPDLFFEEEDLQYEEEILRNPFSVKCWIRYIEFKQNAPRHVLNLIY
ERALKELPGSYKLWYNYLKQRRKQVKNRCVTDPGYEEVNNCHERALVFMHKMPRIWLDYC
QFLMDQCRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSP
ENAEEYIEYLRSIDRLDEAALRLATVVNDERFISKEGKSNYQLWHELCDLISQNPDKVKS
LNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFD
SYAQFEESMIAAKMETTSELGQEEEDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNV
HEWHKRVKLYEGKPREIINTYTEAVQTVDPFKATGKTHTLWVSFAKFYEDNGQIEDARTI
FEKATKVNFKQVDDLACVWCEYGEMELRHENYDQALRILRKATAIPAKKAEYFDASEPVQ
NRVYKSLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYALFLEEHTYFEES
FKAYERGISLFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKYAKTIYL
LYAKLEEEFGLARHAMAVYERATRAVQPSEQYEMYNIYIKRAAEIYGVTHTRSIYEKAIE
VLSDEHAREMCQRFADMECKLGEIDRARAIYSYCSQICDPRTTGSFWQTWKDFEIRHGNE
DTIREMLRIKRSVQATYNTQVNFMASQMLKVSSNATGTVSDLAPGQSGMDDMKLLEQRAE
QLAAEAERDKPRAKEKILFVRSDASRSELAALSRQANPDEIDIDEEEEGGESEENEPDEV
QLEQQSIPSAVFGGLKTD
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctggaggagacgccggtggccgccggcgaggggaagccggacctcttcttc
gaggaggaggatctgcagtacgaggaagaaatcctgcgcaaccccttttctgtcaagtgc
tggatccgctacattgagttcaagcagaacgccccccggcatgtgctgaacctgatctac
gagagagccctcaaggagctgccaggcagttacaagctgtggtacaactaccttaagcag
cgccggaagcaggtgaagaacaggtgtgtgactgaccccggctatgaggaggtgaacaat
tgccatgaacgtgccctcgtcttcatgcacaagatgcctcggatctggctagattactgc
cagttcctcatggaccagtgccggatcacccgcacgcgcaggacctttgaccgggcgctc
cgggcgctgcccatcacacagcaccatcgcatctggcccctctacctgaagtttgtgcgc
ttgtaccccctgcccgagacggctgtgcgagtctaccgcagatacctgaagctgagcccc
gagaacgccgaggagtacattgaatacctgcgctccattgaccggctggacgaggctgcc
ctccgccttgccaccgtggtcaatgacgagaggttcatctcaaaggaggggaaatccaac
taccagctgtggcacgagctgtgtgacctcatctcccagaaccctgacaaggtgaagtcc
ctcaatgttggggccatcattcgcggaggcctgacccgcttcaccgatcagctgggcaag
ctctggtgctccctggccgactactacatccgcagcgggcactttgagaaggcccgggac
gtgtacgaggaggccatccagacggtgatgacggtgcgagatttcacccaggtgtttgac
agctatgcccagttcgaggagagcatgattgcagccaagatggagaccacctctgagctg
gggcaggaggaggaggatgatgtggacctggaactgcgcctggctcgctttgagcagctg
atcacacggcgccccctgctgctcaacagcgtgctgctgcgccagaacccccacaacgtc
cacgagtggcacaagcgcgtgaagctctacgagggcaaaccccgagagatcatcaacacc
tacacggaggccgtgcagaccgtggaccccttcaaggccaccggcaagacacacacactc
tgggtctccttcgccaagttctacgaggacaatgggcagattgaggatgccaggaccata
tttgagaaagccaccaaggtgaacttcaagcaggtggacgacctggcctgcgtgtggtgc
gagtacggggagatggagctgcgccatgagaactatgaccaggccctgcgcatcctccgg
aaagccacggccatcccagccaagaaagcagagtacttcgatgcctcggagcccgtccag
aaccgtgtgtacaagtccctcaaggtctggtccatgctggccgacctggaagagagtctg
ggcaccttcaagtccaccaaggcggtgtacgaccgcatcctggacctgcgcatcgccacg
ccccagatcatcatcaactatgccctcttcctggaggagcacacctacttcgaggagagc
ttcaaggcctacgagaggggcatctccctgttccgctggcccaacgtgtacgacatttgg
aacacctacctgaccaagttcatcgaccgctatggcggcaagaagctggagcgtgcccgc
gacctcttcgagcaggcgctggacggctgcccccagaaatatgccaagaccatctacctg
ttgtatgccaagctggaggaggagttcgggctggcgcggcatgccatggcggtgtatgag
cgggccacgcgggccgtgcagccctcggagcagtacgagatgtacaacatctacatcaag
cgggcggccgagatctacggggtcacccacacccgcagcatctatgagaaggccattgag
gtgctgtcagacgagcacgcccgcgagatgtgccagcgctttgccgacatggaatgcaag
ctgggcgagatcgaccgggcccgggccatctactcctactgctcgcagatctgtgacccc
cggaccacaggctccttctggcagacgtggaaggactttgagatccggcacgggaacgaa
gacacgatccgggagatgctgcgcatcaaacgcagcgtccaggccacctacaacacccag
gtcaacttcatggcctcgcagatgctcaaagtctccagcaacgccacgggcaccgtgtca
gacctggcgccggggcagagtggtatggacgacatgaagctgctagagcagcgggcagag
cagttggcggccgaggcagagcgggacaaaccccgggccaaggagaagatcctctttgtc
aggagcgatgcatcacgcagcgagctggccgcactctccaggcaagcgaaccctgacgag
atcgacattgacgaggaggaggaggggggtgagagcgaggagaatgagcctgacgaggtg
cagctggagcagcagagcatcccctcggctgtgttcggggggctgaagaccgactga
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