Emys orbicularis (European pond turtle): 135894054
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Entry
135894054 CDS
T11511
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
eob Emys orbicularis (European pond turtle)
Pathway
eob03013
Nucleocytoplasmic transport
eob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eob00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135894054 (UPF1)
03015 mRNA surveillance pathway
135894054 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eob03019
]
135894054 (UPF1)
Enzymes [BR:
eob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135894054 (UPF1)
5.6.2.5 RNA 5'-3' helicase
135894054 (UPF1)
Messenger RNA biogenesis [BR:
eob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135894054 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
135894054 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
135894054
NCBI-ProteinID:
XP_065278134
LinkDB
All DBs
Position
24:complement(14926389..14955822)
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AA seq
1113 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGHGGPGQGPP
GQGPPGQIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLR
YKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQS
ALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQR
PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLC
AKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERE
LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ
LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV
TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA
KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN
EHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNN
LRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQ
IGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPATGRGTPKGKTGRGGRQKNRF
GIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGD
EFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagactctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccggacacgggggcccggggcagggcccgccg
gggcaggggccgcccggacagatcgaggcacaggttaatggtcctgatgggatactccaa
aatggtgcagtggatgataatgtagctaaaaccagtcaactgcttgcagaattaaacttt
gaagaagatgaagaagatacctattacaccaaggatcttcctgtgcacgcttgcagttac
tgtggtatccatgacccagcttgtgtggtttactgcaataccagcaagaagtggttctgt
aatgggcgtggaaatacatctggcagccacattgtaaatcatctcgtgagggcaaagtgt
aaagaggtgactcttcacaaagatggtcctttgggggagacggtcttggagtgttataat
tgtggctgtcgtaatgtgttcctccttggcttcattccagctaaggctgactcggtagtc
gtattactgtgcaggcaaccgtgtgccagtcagagcagtttaaaggatattaattgggac
agctcacagtggcaacctcttatccaagaccgctgtttcctttcctggctggtaaagatt
ccttctgaacaggagcagctgagagcacgtcagattacagctcaacaaattaacaaactg
gaagaactctggaaggaaaatccatctgcaacccttgaagacttggaaaaacctggtgtt
gatgaagaaccgcagcatgtcttacttagatatgaggatgcttatcaataccaaaatatt
tttggacctctagtcaagcttgaagcagattatgacaagaaactcaaggagtcccagacc
caagataacatcacagtgagatgggacctgggcttgaacaagaagagaattgcttacttc
actttgccaaagactgactcagatatgcgtcttatgcagggagacgaaatctgcctgaga
tataaaggagacctggcccctttgtggaaaggaattggtcatgttattaaagttcctgat
aattatggtgatgagatagctattgagctgaggagcagtgttggagcacctgtggaggtt
actcataacttccaagtggattttgtgtggaagtccacttcatttgacagaatgcagagt
gctttaaaaacatttgctgtggatgaaacttcagtgtctggctacatctaccacaaactg
ttaggtcatgaggtagaagatgtgattattaaatgccagctgccaaagcgttttacagcg
caaggacttcctgacctcaatcattctcaggtttatgctgtaaagactgtcttgcagcgt
cctctgagccttatccaaggtccccctggtacaggaaaaactgtgacatcagccactatt
gtctaccatttagctaggcagggcaatgggcctgtgttagtttgtgccccaagtaacata
gctgtggatcagctcactgagaagatccatcagacagggctaaaagtcgttcgtctatgt
gctaaaagccgcgaggcaattgattctcctgtatctttcctggcattgcacaaccagatc
agaaacatggatagtatgcctgagctccagaaactgcagcagctgaaagatgaaactgga
gaattgtcatctgctgatgagaaacgctatcgtgcactgaaacgaacagcagagcgtgaa
ttacttatgaatgcagatgttatttgctgtacatgtgtgggagcaggtgacccaagactt
gcaaaaatgcagtttcgttccattttaatagatgagagcacacaggctactgaaccagaa
tgtatggtgccagttgttctgggagccaaacagctgatccttgtcggtgatcactgccag
cttggtcctgtcgtgatgtgtaaaaaagctgcgaaggcaggcctgtctcagtcccttttt
gagaggcttgtggtgttgggtatccgtccaattcgcctgcaagtgcagtatcgtatgcac
cctgcacttagtgcttttccatccaacatcttctatgaggggtcactccagaacggtgtt
actgcagcggaccgtgtgaaaaagggctttgatttccagtggccccagccagataagcca
atgtttttctatgtgacacagggtcaagaagaaattgccagttcaggcacctcttactta
aacaggacggaagctgctaatgtggagaagataactacaaagttattgaaagctggtgcc
aagcctgatcagattggcattataactccctatgagggccagcgctcttacctggtacag
tacatgcagttcagtggttccttgcatacaaaactctatcaggaagtggaaatcgcaagt
gttgatgctttccaaggacgagagaaggactttattatcctttcttgtgtaagagccaat
gagcaccaaggaattggatttttaaatgatcctagacgtcttaatgtggctctcaccaga
gcaagatatggagtaattattgttgggaacccaaaagctctgtctaaacaaccactttgg
aatcacctgctgaactactacaaggagcagaaggtactggtagagggaccactaaacaat
ctccgagaaagccttatgcagttcagcaagccccgtaaacttgtcaacaccatcaaccca
ggtgcccgtttcatgactactgccatgtatgatgcacgtgaagctattatcccaggatct
gtttatgaccggagcagtcaaggacgcccatcgaacatgtacttccaaacacatgatcaa
attggaatgattagtgctggacccagccacgtcactgctatgaacattcctatccctttc
aaccttgtgatgccaccaatgccaccaccaggatattttgggcaggctaatggaccggcc
acaggacgtgggacacctaaaggaaagactggtcgtggtgggcgccagaaaaatcgtttt
gggattcctggaactagccagtcaaaccttccaaacagtcaagcgagccaagatgtggtg
tcccagccattctcccagggtccactgactcagggttatatctccatgagtcagccatca
cagatgagccagccaggactctcccagccagaattatcacaggacagttaccttggtgat
gagtttaaatctcagattgatgtggcgctgtcgcaggactctacttaccagggtgaacgt
gcatatcaacatggtggagtgacaggactgtcacagtattag
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