KEGG   Emys orbicularis (European pond turtle): 135894232
Entry
135894232         CDS       T11511                                 
Symbol
KDM4B
Name
(RefSeq) lysine-specific demethylase 4B isoform X1
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
eob  Emys orbicularis (European pond turtle)
Brite
KEGG Orthology (KO) [BR:eob00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:eob03036]
    135894232 (KDM4B)
Enzymes [BR:eob01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     135894232 (KDM4B)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     135894232 (KDM4B)
Chromosome and associated proteins [BR:eob03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    135894232 (KDM4B)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD SLX1_C DUF7141
Other DBs
NCBI-GeneID: 135894232
NCBI-ProteinID: XP_065278365
LinkDB
Position
24:9177834..9342125
AA seq 1122 aa
MGSENPSPQNPGCKIMTFRPTLEEFRDFGKYVAYIESQGAHRAGLAKVIPPKEWKPRKTY
DDIDDMVIPAPIQQVVTGQSGLFTQYNIQKKPMTVGEYRRLANSEKYCTPRHQDFEDLER
KYWKNLTFVSPIYGADISGSLYDADVEEWNIGNLNTLLDMVEHECGIIIEGVNTPYLYFG
MWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAKGFFPGSSQGCDAFLR
HKMTLISPSILKKYGIPFDRITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDY
GKMATQCTCRKDMVKISMDVFVRVLQPERYDLWKQGKDGAVLDHMKPTALTSPELDAWNE
TKPELKAKLLRRMGDEEEDNKQNYRSHRKRSQPRRHKTEDQKSLGEVIAMETALEEVKMK
EELKRGPDLDEEERSKVTEGGEGDSKVKGRPPKVKGERKKKHPHHQHHHHHSHHLQPPQP
PLQQQLLPLPPPQPQQQPAEEEASAAQPLIPVAAPASATAEKSLPSAPLNIVLPSEVPSE
EDDFKPRPIIPMLYVVPRTKKVVFEKERISCQQAFEQFATQKGQVWREQVVPLELTVKEE
ESGEAENADVATEVSDLQATSAFLKMKMEIKKSRRHPLGKPPTRSPLSVVKQEASSDEET
FPFSGEEDVSDPEALKSLLSLQWKNKAHNFPAERKFNAAAALSEPFCAVCTLFYPYNQSL
QMDKEAVQVSTGESSSLLQLSKCGQKTKPLIPEMCFTSGGENTEPLPSNSYIGEDGTSLL
ISCAKCCLQVHASCYGIRPDLVNEGWSCSRCSANAWAADCCLCNLRGGALQMTTDGRWIH
IICAIAVPEARFLNVIERHPVDISAIPEQRWKLKCVYCRKRMKKVSGACIQCSYEHCSTS
FHVTCAHAAGVPMEPDDWPYVVSITCFKHKAANHNIQFRREVSLGQTVITKNRNGLYYRC
KVIGMTTQTFYEVNFDDGSYSDNVYPESITSRDCIQMGPPPEGELVQLQWTDGIIYKAKF
IAAQISQIYQVEFEDGSQLMVKRGDIYTLEEELPKRVKSRLSLSTGAPQEGVFSGDEVKA
AKRPRVGNSRNPEDYGQNPDYLAFMETLLQTQYQPGPQSNMF
NT seq 3369 nt   +upstreamnt  +downstreamnt
atggggtctgaaaacccaagtccacagaaccctggctgtaagatcatgaccttccgtccc
accctagaggagtttcgggactttgggaaatatgttgcctacatcgaatcgcagggagct
catagggcagggcttgccaaggtgattcctcccaaggaatggaagccccgaaagacttat
gatgacatcgatgacatggtcatcccagcgcctatccagcaggtggttactgggcagtcg
gggttattcacccagtataatatacagaagaaacccatgacggtgggagaataccgacgt
ctggccaacagtgagaagtactgtactcctcgccaccaagattttgaagacctggaacgc
aaatactggaagaatctgacattcgtctcaccaatttatggggcagatatcagtggctca
ctatatgatgcagatgtagaagaatggaatattgggaatctgaacaccctgttggacatg
gtggagcatgagtgtgggattatcatagaaggtgtgaacaccccctacctttattttggc
atgtggaaaacaacatttgcatggcatactgaggacatggatctctacagcatcaactac
ctgcattttggggagccgaaatcctggtatgccataccaccagaacacggcaagcgattg
gaacgcctggcaaaaggatttttcccaggaagctctcagggatgtgatgccttccttcgc
cacaagatgaccctcatttcaccctccatcttgaagaaatatggcatcccatttgatcgg
atcacccaagaggctggagagtttatgatcacttttccttatggctaccacgcgggattc
aaccacggcttcaactgcgctgagtccaccaactttgccacactgcggtggattgactat
ggcaaaatggctacgcaatgcacttgccgcaaagacatggtgaagatttccatggatgtt
tttgtgagggttctacagccggaacgttatgacttatggaaacaagggaaagatggtgct
gttctggaccacatgaaacccacagctctgaccagcccagagctggatgcctggaatgag
acaaagcctgagctgaaagctaagctgctccgcaggatgggagatgaagaagaggacaac
aaacaaaattaccggtctcacagaaaaagaagtcaacccagaaggcataaaacagaggat
cagaagtctcttggggaagtcatagctatggagactgccctggaagaagtcaaaatgaag
gaggagctgaaaagagggccagacctagatgaagaagagagaagtaaagtgactgagggg
ggagaaggagacagcaaggtaaagggccgtcccccaaaagtaaaaggcgagagaaagaag
aagcaccctcaccatcagcaccaccaccatcacagtcatcacctgcagccacctcagccc
cctttgcagcagcagctgttgcccctgcctcctccacagccacaacagcaaccggcagag
gaagaggcatcagcagcacagccactgattcctgtagcagcaccagcatcagccacggca
gagaagagcttaccctctgctcccctcaacatcgtcctgccctcagaggtgccaagcgag
gaggatgactttaagccccgacccatcattcccatgctttatgtggttccacggaccaaa
aaggtggtctttgaaaaggagcgcatatcctgccagcaggcctttgagcagtttgccaca
caaaaaggccaggtttggcgggagcaggtggtccctttggagctcactgtgaaggaggag
gagagcggagaagcagaaaatgcagatgttgccactgaggtcagtgacttacaggccacg
tctgcttttttaaaaatgaagatggagataaagaaaagtcgccgtcacccactgggcaaa
ccaccaacccgctccccattgtctgtggttaaacaggaggcctcaagtgatgaggaaacg
tttccattttccggggaggaggatgtgagtgacccagaggctttgaagtctttactttcc
ctgcagtggaagaataaagcacataacttcccagctgagcgaaaattcaatgcagctgct
gccctgagcgagcctttctgtgctgtctgtaccctcttctacccttataaccagtcctta
cagatggataaagaggctgtccaggtctccacaggggagagctcctccttgctccagctt
tcaaagtgtggacagaagacaaagcctctgatccctgagatgtgctttacctcaggcggt
gaaaatacagagccccttccttcaaactcgtacatcggagaagatggaaccagcctcctg
atatcctgtgccaagtgctgcctgcaggttcatgctagttgctatggaatacgccctgat
ctggtgaatgaaggctggtcttgttcacggtgctcagccaatgcatgggcagcggactgc
tgcctgtgtaatctcaggggaggagctcttcaaatgaccactgatggaaggtggatccat
ataatctgtgctatcgctgtcccagaggcccgtttcctcaacgtaatagagcgccatcct
gtggacatcagtgctattccagagcagcggtggaaactgaaatgtgtgtactgccggaag
cggatgaagaaggtgtctggtgcctgcattcaatgctcctatgagcactgctccacttcc
ttccatgtgacctgtgcacatgccgctggggtacccatggagccggatgattggccatat
gttgtgtccatcacttgcttcaaacataaagcagccaaccacaatatccagtttcggagg
gaggtatcgctggggcagacggtgattacgaagaaccgcaatggactctactacaggtgt
aaagtaattggcatgacaacgcaaaccttctatgaagtgaactttgacgatggctcttac
agcgacaacgtttacccggaaagcattactagcagagactgcattcagatgggaccccct
ccagaaggcgagttggttcagctgcagtggactgatggaatcatctataaggccaagttc
attgcagcccagatcagtcagatttatcaggtggagtttgaagatggctcccagctgatg
gtaaaacgtggtgatatttacacgttggaggaggagcttcctaagagagtgaaatctcgc
ctgtccctcagcactggggcccctcaggaaggagtgttttcgggagacgaagtgaaagcg
gccaagcgcccccgagtggggaattccaggaatcccgaggactatggacagaacccagat
tatttggccttcatggagaccctgctgcagacgcagtaccagccaggaccacagagcaac
atgttttaa

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