Escherichia coli O7 K1 CE10: CE10_1612
Help
Entry
CE10_1612 CDS
T01999
Symbol
hrpA
Name
(GenBank) putative ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
eoc
Escherichia coli O7:K1 CE10
Brite
KEGG Orthology (KO) [BR:
eoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eoc03019
]
CE10_1612 (hrpA)
Enzymes [BR:
eoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CE10_1612 (hrpA)
Messenger RNA biogenesis [BR:
eoc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CE10_1612 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
ResIII
PhoH
DUF6145
AAA_16
AAA_23
NTPase_1
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AEQ12417
LinkDB
All DBs
Position
1632827..1636729
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFTALQQRLDSLMLRDRQRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGK
VLLREAARPEITYPDNLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDEALFEFYDQRISHDVISARHFDSWWKKVSRETLDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattgacctttacggccttgcagcagcggctggattcgctgatg
ctgcgcgacagacagcgtttttctcgccgtctgcacggtgttaagaaggttaaaaatcct
gatgcacaacaggccattttccaggagatggcgaaagagattgaccaggcggcagggaaa
gtactgctgcgtgaagcggcacgaccggaaatcacttatcccgacaatttgccggttagt
cagaaaaagcaggacattctcgacgcgattcgtgatcaccaggtggtgatcgtcgccggg
gaaaccggttccggtaaaacgactcagctaccgaaaatctgtatggagctggggcgcggt
attaaagggctgatcggtcatacccaaccgcgtcgcctggcggcacgaacggtggctaac
cgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgtttc
agcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggca
gagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcgcac
gaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcggcgt
cctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgccac
tttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgctat
cgcccgattgttgaagaagctgatgacaccgagcgcgaccagttgcaggcgatttttgat
gccgtagacgaactgagccaggaaagccctggcgacattctgatctttatgagcggtgag
cgggaaattcgcgataccgccgatgcgctgaacaagctaaatctgcggcataccgaaatc
ttgccgctttatgcgcggctttcgaacagcgaacagaaccgcgtgttccagtcgcacagt
ggacggcgcattgtgctggcgaccaacgtcgcggaaacctcgctgaccgtaccgggtatt
aaatacgttatcgaccccggtacagcgcgtatcagccgctacagctatcgcaccaaagtg
cagcgtttgccgattgaacccatttcgcaggcgtctgccaatcagcgtaaaggccgctgt
ggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctttcgcgc
ccggaatttaccgatccggagattctgcgtaccaacctggcctcggttattttgcagatg
actgcgctggggctgggcgatatcgctgcgttcccgtttgttgaagcaccggataaacgc
aatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaacag
gccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgaccca
cgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatgatt
atcacgtccgcgctctccattcaggatccgcgcgagcgtccgatggataaacagcaggca
tcggacgaaaaacatcgtcgcttccacgacaaagaatccgacttcctcgcgtttgtaaat
ctgtggaattatcttggcgagcagcaaaaggcgctttcttccaacgccttccgtcgcctg
tgtcgtaccgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacactcag
ttgcgccaggtggtgaaagaacttggcattccggttaacagcgaaccggcggagtatcgc
gaaattcacatcgccttactgaccggtttgctttcccatatcggcatgaaagatgccgat
aaacaagaatataccggcgcacgtaacgcgcgtttctccattttccccggttccggctta
tttaaaaagccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctgtgg
gggcgtattgctgcgcgtatcgaccctgaatgggtagaacccgttgctcagcatttgatt
aaacgcacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacggaa
aaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccagatt
gatccggcgttatgtcgtgaactctttattcgccacgctctggtggaaggtgactggcag
acgcgtcacgcattcttccgtgaaaacctgaaactgcgggccgaagtggaagagctggaa
cacaaatcacgtcgccgcgatattctggttgatgacgaagcgttgtttgagttctacgac
cagcgcatcagccacgatgtaatctccgctcgtcacttcgacagctggtggaaaaaagtc
agccgcgaaacgcttgatttgctcaactttgaaaagagcatgttgatcaaagaaggggcg
gaaaaaatcagcaagctggattatccgaacttctggcatcagggcaatctcaagctgcgt
ttgagctatcagtttgagcccggcgcggatgctgacggtgtgactgtgcatatcccgctg
ccgttacttaaccaggttgaggagagtgggtttgagtggcagatccccggtctgcgccgc
gaactggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgtacct
gcgccaaactatgccgaagcgtttttaggccgcgtcacaccgctggagttaccgttgctc
gacagccttgagcgcgagttacggcggatgaccggcgttaccgttgaccgcgaagactgg
cactgggatcaggtgcctgatcacctgaaaatcaccttccgcgtggtggatgacaaaaac
aagaagctaaaagaagggcgctctctacaagatctgaaagatgcgctgaaaggcaaagtg
caggaaacgctgtctgcggtggcggatgacggtatcgagcagagcggcttacatatctgg
agttttggtcagctgccggaaagctacgaacagaagcgtggtaactacaaagtgaaggcg
tggccggcgctggtggatgaacgcgacagcgtggcgatcaaactgtttgataatccgctg
gaacaaaagcaggcaatgtggaacggtcttcgccgtctactgctgctgaatattccgtcg
ccaatcaaatatttgcatgagaagttgccaaacaaagccaaacttgggctgtactttaac
ccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggggtggatcaactg
atcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgagaaa
gtgcgtgccgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaattctt
acggcagtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcgctg
gggctttctgacattaaagcgcagatgggcgggttggtgtatcgcggttttgtcactggc
aacggttttaaacggctgggcgacacgctacgttatttgcaggcgattgaaaaacgactg
gaaaaactggcggttgacccgcatcgtgaccgtgctcagatgctgaaagtcgaaaacgtc
cagcaggcgtggcagcaatggatcaacaaactgccgcccgcacgtcgtgaggatgaagac
gtgaaagagatccgttggatgatagaagagttgcgcgttagttacttcgctcaacaactt
ggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagcggt
taa
DBGET
integrated database retrieval system
