Escherichia coli O7 K1 CE10: CE10_3941
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Entry
CE10_3941 CDS
T01999
Symbol
rtcB
Name
(GenBank) conserved protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
eoc
Escherichia coli O7:K1 CE10
Brite
KEGG Orthology (KO) [BR:
eoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eoc03016
]
CE10_3941 (rtcB)
Enzymes [BR:
eoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CE10_3941 (rtcB)
Transfer RNA biogenesis [BR:
eoc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CE10_3941 (rtcB)
Prokaryotic type
tRNA splicing ligases
CE10_3941 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AEQ14650
LinkDB
All DBs
Position
complement(3997936..3999162)
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AA seq
408 aa
AA seq
DB search
MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTALTAADLPENLAELRQAIEAAVPHGRTTGRCKRDK
GAWEKPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDESDQV
WIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQ
LFASLNRDAMMENVVTALQSVTQKTVRQPQTLAMEEINCHHNYVQKEQHFSEEIYVTRKG
AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRA
TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVIYTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattactgaccactgaaaatgctccggtaaaaatgtggaccaaaggcgta
ccggtagaagccgatgcgcgtcagcaacttattaataccgcgaagatgccgtttattttc
aaacatattgcggtaatgcctgatgtacacctgggtaaaggttccaccattggtagcgtg
atcccgaccaaaggggcgattattccggcggcggtgggggtagatatcggttgtggaatg
aacgcgctgcgtaccgcgttaacggcggctgacctgcctgaaaacctggcggagctgcgt
caggcgattgaagctgccgtgccgcatgggcgtaccacaggccgttgtaaacgtgataaa
ggcgcatgggaaaaaccgcctgttaacgtcgatgcgaaatgggctgagcttgaagccggt
tatcagtggttaacgcaaaaatatccgcgtttccttaataccaataactataaacacctg
ggaacgctgggaacgggtaaccactttattgaaatttgccttgatgagtcggatcaggtg
tggattatgctgcactccggttcacgcggaattggtaatgccatcgggacttactttatc
gatctggcgcaaaaagagatgcaggaaacacttgaaacgttgccatcgcgtgacctggcg
tactttatggaaggtacggaatattttgacgattacctgaaagcggtggcctgggcgcag
ctttttgccagccttaaccgcgatgcgatgatggaaaacgtggtaacggcgttgcagagc
gttacgcagaaaacggtaagacagccacaaacgctggcgatggaagagatcaactgtcac
cacaactatgtgcaaaaagaacagcactttagcgaagagatctatgtgacgcgtaaaggc
gcggtgtctgctcgtgctggtcaatatggaattattcccggttcgatgggggcgaaaagc
tttattgtccgtgggctgggaaatgaagagtcgttctgttcgtgcagccacggtgccggg
cgggtaatgagccgtactaaagcgaaaaaactgttcagtgtggaagaccaaattcgtgcc
accgcgcatgtggaatgccgtaaagatgccgaagtgatcgacgaaatcccgatggcgtat
aaagatattgatgcggtgatggcggcacaaagcgatctggtggaagttatctataccctg
cgtcaggtggtgtgcgtaaaaggataa
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