Escherichia coli O7 K1 CE10: CE10_3942
Help
Entry
CE10_3942 CDS
T01999
Symbol
rtcR
Name
(GenBank) sigma 54-dependent transcriptional regulator of rtcBA expression
KO
K14414
transcriptional regulatory protein RtcR
Organism
eoc
Escherichia coli O7:K1 CE10
Brite
KEGG Orthology (KO) [BR:
eoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
eoc03000
]
CE10_3942 (rtcR)
Transcription factors [BR:
eoc03000
]
Prokaryotic type
Other transcription factors
Others
CE10_3942 (rtcR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
Mg_chelatase
AAA_16
NACHT
AAA_22
AAA_30
AAA_33
AAA_7
AAA_14
AAA_2
AAA_19
T2SSE
ATPase_2
TsaE
ResIII
MCM
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
AEQ14651
LinkDB
All DBs
Position
3999351..4000949
Genome browser
AA seq
532 aa
AA seq
DB search
MRKTVAFGFVGTVLDYAGRGSQRWSKWRPSLCLCQQESLVINRLELLHDARSRSLFETLK
RDIANVSPETKVVGVEIELHNPWDFEEVYACLHDFARGYAFQPEKEDYLIHITTGTHVAQ
ICWFLLAEARYLPARLIQSSPPRKKEQPRGAGEVTIIDLDLSRYNAIASRFAEERQQTLD
FLKSGIATRNAHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFSG
AFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA
MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVVEGKFREDLYARINLWTFALPG
LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSSQAAWRGNFRELSASVT
RMATFATSGRITLEVVEDEINRLRYNWQESRPSVLTQLLGAEAENIDLFDRLQLEHVIAI
SRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFNLTWEAVQDQHSSS
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaacagtggcttttggctttgtcggcaccgtactggattatgccgggcgcggc
agtcagcgatggtcgaaatggcgtccgtcactctgtctatgccagcaagaatcgttagtc
atcaatcgactggaattgttgcacgacgcccgctcacgctcgctgtttgaaacgcttaaa
cgcgatatcgccaatgtttcgccagaaacaaaagtggtgggcgttgagatagaactgcat
aacccgtgggatttcgaagaggtttacgcctgcctgcatgatttcgcccgtggttacgcg
ttccagccagaaaaagaagactatttaattcacatcaccaccggtacccacgtcgcgcag
atttgctggtttctgctggcagaagcgcgttatctacccgcccggttgatacaatcttca
ccaccgcgcaaaaaagaacaaccgcgcggcgcaggtgaagtgacgattatcgatctcgat
ttaagccgttataacgccatcgccagccgctttgccgaggaacgccagcaaaccctcgat
ttcctcaaatccggcattgccacgcgtaacgcccacttcaaccgcatgattgagcagatc
gaaaaagtggcgatcaaatcccgcgcaccgatcctgctcaacggcccaaccggtgcggga
aagtcgtttctggcacgacgcatcttcgagttaaaacaggcgcggcatcagtttagcggc
gcgtttgtggaggtgaactgtgccactctgcgcggcgataccgccatgtcagcgctgttt
ggtcatgtgaaaggcgcgtttaccggggcgcgggagtcgcgggaaggattattacgcagc
gccaacggcgggatgttatttcttgatgagattggcgaactgggcgcagacgaacaggca
atgctgctgaaagccattgaagagaaaaccttttacccgtttggcagcgatcgccaggtg
agtagcgattttcagcttatcgccggaacggtgcgcgatttgcgccaactggttgtcgaa
ggcaaatttcgcgaagacctgtacgcacggattaatctctggactttcgctctgccgggg
ctacgccagcgccaggaagatattgaacctaacctggattatgaagtggagcgccacgcc
tcacttaccggcgacagcgtgcgttttaacaccgaagcgcggcgcgcctggctggccttt
gcaacatcatctcaggcggcatggcgcggtaactttcgcgagctttctgccagcgtcacg
cgaatggcaacctttgccactagcggacgcatcactctggaagtggttgaagatgagata
aaccgtctgcgctataactggcaggagagccgcccttccgtgcttacacagctactgggc
gctgaagcggaaaacatcgacctctttgatcgactgcaactggaacacgttatcgctatc
agccgtcaggcaaagtcgctttccgctgccggacgccagctttttgacgtttcgcgccaa
gggaaagccagcgtcaacgacgcggatcggctacgcaaatacctggcgcgttttaatctg
acgtgggaagccgtgcaggatcagcacagctccagttga
DBGET
integrated database retrieval system
