Escherichia coli O103 H2 12009 (EHEC): ECO103_0476
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Entry
ECO103_0476 CDS
T01096
Symbol
ybbB
Name
(GenBank) tRNA 2-selenouridine synthase, selenophosphate-dependent
KO
K06917
tRNA 2-selenouridine synthase [EC:
2.9.1.3
]
Organism
eoh
Escherichia coli O103:H2 12009 (EHEC)
Brite
KEGG Orthology (KO) [BR:
eoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eoh03016
]
ECO103_0476 (ybbB)
Enzymes [BR:
eoh01000
]
2. Transferases
2.9 Transferring selenium-containing groups
2.9.1 Selenotransferases
2.9.1.3 tRNA 2-selenouridine synthase
ECO103_0476 (ybbB)
Transfer RNA biogenesis [BR:
eoh03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
ECO103_0476 (ybbB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhodanese
T2SSE
AAA_16
AAA_18
AAA_23
DUF3333
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAI29343
LinkDB
All DBs
Position
complement(537424..538518)
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AA seq
364 aa
AA seq
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MQERHTEQDYRALLIADTPIIDVRAPIEFEQGAMPAAINLPLMNNDERAAVGTCYKQQGS
DAALALGHKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQRSHIVQSWLYAAGIDYPL
VEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFG
RTLQPQLSQASFENLLAAEMLKTDARQDLRLWVLEDESRMIGSNHLPECLRERMTQAAIA
VVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNE
LAAQLDTALTTQLTTGSTDGHLAWLVPLLKEYYDPMYRYQLEKKAEKVVFRGEWAEVAEW
VKAR
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagagacacacggaacaggactatcgtgccctgctgattgctgatacgcccatt
attgatgttcgcgcccctatcgagtttgagcaaggcgcaatgcccgccgctatcaatctg
ccgttaatgaataacgatgaacgcgccgccgttggcacctgctataaacagcaaggctca
gacgcagcgctggcgctggggcataaactggtggcgggtgaaattcgtcagcagcgcatg
gacgcctggcgggcagcgtgcctgcaaaatccgcaaggtattctctgctgcgcccgtggc
ggtcagcgctcacatattgtgcaaagctggttgtatgcagcggggattgattatccgctg
gtggaaggcggttataaggcactgcgccagaccgcgattcaggcgactattgaactggca
caaaaaccgatagtgctgattggcggttgtactggcagcggtaaaacgctgttagtgcag
caacagccgaacggtgttgatctggaagggctggcgcgccatcgcggttcggcgtttggt
cgcacgttacaaccacaacttagccaggcgagttttgaaaacctgctggctgccgaaatg
ctgaaaaccgacgcccgtcaggatttgcgcctgtgggtgctggaagacgaaagccggatg
atcggttcgaatcacctgccggaatgcctgcgcgagcgaatgactcaggcggcgattgcg
gtggtagaagatccgtttgagatccgtcttgagcgcctgaacgaagagtatttcttgcgt
atgcatcatgattttacccacgcttatggcgacgaacagggctggcaggaatattgcgaa
tacctgcatcacggactttcggcgattaagcgtcggctggggttacagcgctataacgaa
ctcgctgcccagctggatacggcgctgacaacgcaactcaccaccggcagcaccgacggt
catctggcctggctggtgccgttacttaaagaatattacgacccaatgtatcgctatcag
cttgagaaaaaagcggaaaaagttgtctttcgcggtgagtgggcggaagtggcggaatgg
gttaaggcgcggtaa
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