Escherichia coli O103 H2 12009 (EHEC): ECO103_1085
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Entry
ECO103_1085 CDS
T01096
Symbol
csgD
Name
(GenBank) DNA-binding transcriptional activator CsgD in two-component regulatory system
KO
K04333
LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
Organism
eoh
Escherichia coli O103:H2 12009 (EHEC)
Pathway
eoh02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
eoh00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02026 Biofilm formation - Escherichia coli
ECO103_1085 (csgD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
eoh03000
]
ECO103_1085 (csgD)
Transcription factors [BR:
eoh03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
ECO103_1085 (csgD)
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GFIT
Motif
Pfam:
GerE
VpsT-like_REC
Sigma70_r4_2
HTH_24
HTH_40
HTH_23
RNA_binding
Motif
Other DBs
NCBI-ProteinID:
BAI29924
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Position
complement(1187289..1187939)
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AA seq
216 aa
AA seq
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MFNEVHSIHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDM
MEADKKLIHYWQDTLSRKNNNIKILLLNTPENYPYRDIENWPHINGVFYAMEDQERVVNG
LQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL
FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgaagtccatagtattcatggtcatacattattgttgatcactaaaccgtct
ttgcaagcgacagctctcttgcagcaccttaaacaatcgctggcaattacaggaaaatta
cataatattcaacgttctctggacgatatatcttcaggctctattattcttctggatatg
atggaagcagataaaaagcttatccattattggcaggatactttgagcaggaaaaacaac
aatatcaaaatattgttgctaaatacgcctgaaaattacccgtaccgcgacattgaaaac
tggcctcatatcaacggcgttttttatgccatggaggatcaagaacgtgttgtcaatggg
ttgcaaggcgtcctgcgcggcgaatgctactttacgcaaaagcttgccagttacctgatt
acacattctggtaactatcgttataacagcacggaatcagccctccttactcatcgggaa
aaagagatcctgaataagctgcgtatcggcgcgtctaataacgagatcgctcgttcgttg
ttcatcagcgaaaatacggttaaaacgcatctttataatcttttcaagaagatagccgta
aaaaaccggacacaagcggtttcctgggcaaacgataacctcaggcgataa
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