Escherichia coli O103 H2 12009 (EHEC): ECO103_1545
Help
Entry
ECO103_1545 CDS
T01096
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
eoh
Escherichia coli O103:H2 12009 (EHEC)
Brite
KEGG Orthology (KO) [BR:
eoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eoh03019
]
ECO103_1545 (hrpA)
Enzymes [BR:
eoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECO103_1545 (hrpA)
Messenger RNA biogenesis [BR:
eoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECO103_1545 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
BAI30369
LinkDB
All DBs
Position
1626077..1629922
Genome browser
AA seq
1281 aa
AA seq
DB search
MLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPV
SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVA
NRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEA
HERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTE
ILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEY
REIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRL
WGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQ
IDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEFY
DQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKL
RLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPVRRNFV
PAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDK
NKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVK
AWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYF
NPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQI
LTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKR
LEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEIRWMIEELRVSYFAQQ
LGTPYPISDKRILQAMEQISG
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgacagactgcgtttttctcggcgtctgcacggtgttaagaaggttaaaaat
cctgatgcacaacaggccattttccaggagatggcgaaagagattgaccaggcggcaggg
aaagtcctgctgcgtgaagcggcacgaccggaaattacttatcctgacaatttaccggtt
agtcagaaaaaacaggacattctcgaagcgattcgtgatcaccaggtggtgatcgtcgcc
ggggaaacgggttctggtaaaacgactcagttaccgaaaatctgtatggagctggggcgc
gggattaaagggctgatcggccatacccagccgcgtcgcctggcggcaagaacggtggcg
aaccgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgt
ttcagcgatcacgttagtgataacacgatggtcaagctgatgaccgacggtatcctgctg
gcggagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagca
cacgaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcgg
cgtcctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgc
cactttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgc
tatcgaccgattgttgaagaagccgacgacaccgagcgcgatcagttgcaggcgattttt
gacgccgtagacgaactgagtcaggaaagccctggcgacattctgatctttatgagtggt
gagcgggaaattcgcgataccgccgatgcgctgaacaagctaaatctgcgtcataccgaa
atcttgccgctttatgcgcggctttcgaacagcgaacagaaccgcgtgttccagtcgcac
agcggacggcgcattgtgctggcgaccaacgtcgcggaaacctcgctgaccgtaccgggg
attaaatacgttatcgaccccggtacagcacgtatcagccgctacagctatcgcaccaaa
gtgcagcgtttgccgattgaacccatttcgcaggcgtctgccaatcagcgtaaaggccgc
tgtgggcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctttcg
cgcccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcag
atgaccgcgctggggctgggcgatatcgctgcgttcccgtttgtcgaagcaccggataaa
cgcaatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaa
caggccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgat
ccacgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatg
attatcacgtccgcgctttccattcaggatccgcgcgagcgtccgatggataaacagcag
gcatcggacgaaaaacatcgtcgcttccacgacaaagagtctgacttcctcgcgtttgtg
aatctgtggaattatcttggcgagcagcaaaaggcgctttcttccaacgccttccgtcgc
ctgtgtcgtaccgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacc
cagttgcgccaggtggtgaaagaacttggcattccggttaacagcgaaccggcggagtat
cgcgaaattcacattgcgttgctgacgggtttactttcccatatcggcatgaaagatgcc
gataaacaagaatataccggcgcacgtaacgcgcgtttctccatctttcccggttctggt
ttattcaaaaaaccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctg
tgggggcgcattgctgcgcgtatcgacccggaatgggtggagcctgtcgctcagcatttg
attaaacgcacctacagcgaacctcactgggaacgggcgcagggcgcggtgatggcaacg
gaaaaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccag
atcgatccggcgttatgccgtgaactctttattcgccatgcgctggtggaaggtgactgg
cagacgcgtcacgcattcttccgtgaaaacctgaaactgcgggccgaagtggaagagctg
gaacacaaatcacgtcgccgcgatattctggttgatgacgaaacgttgtttgagttctat
gaccagcgcatcagccacgatgtgatctctgcacgccacttcgacagctggtggaaaaaa
gtcagccgcgaaacccctgatttgctcaactttgaaaaaagcatgttgatcaaagagggc
gcagaaaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctg
cgtttgagctatcagtttgagcccggcgcggatgctgacggtgtgaccgtacatattccg
ctgccgttacttaaccaggttgaggaaagcgggtttgaatggcagatccccggtctgcgc
cgcgaactggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgta
cccgcaccaaactacgccgaagcgtttttaggccgcgtcacaccgctggagttaccgttg
ctcgacagccttgagcgcgagttacggcggatgaccggtgttaccgttgaccgcgaagac
tggcactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggacgacaaa
aataagaagctaaaagaagggcgctcattacaggatctgaaagatgcgctgaaaggcaaa
gtgcaggaaacgctgtccgcggtggcggatgacggtatcgagcagagcgggctgcatatc
tggagctttgggcaactgccggaaagctacgaacagaagcgcggcaactataaagtgaag
gcgtggccggcgctggtggatgaacgtgacagtgtggcgatcaaactgtttgataacccg
ctggagcaaaaacaggcaatgtggaacggtcttcgccgtctactgctgctaaatattccc
tcgccgatcaagtatttacatgagaagttaccaaacaaagccaagcttggactgtacttt
aacccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggtgtggatcaa
ctgatcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgag
aaagtgcgtgccgaactgaacgacacggtggtagatattgcgaagcaggtcgagcaaatt
cttacggcagtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggca
ctggggctttctgacattaaagcgcagatgggcgggttggtatatcgcggttttgtcact
ggtaacggcttcaaacggctgggcgacacgctgcgatatttgcaggcgattgaaaaacgg
ctggaaaaactggcggttgatccacatcgcgaccgtgctcagatgctgaaagtcgaaaac
gtccagcaggcgtggcagcaatggatcaacaaactgccgcctgcacgtcgtgaggatgaa
gacgtgaaagagatccgttggatgatagaagagttgcgcgttagttacttcgctcaacaa
cttggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagc
ggttaa
DBGET
integrated database retrieval system
