Escherichia coli O103 H2 12009 (EHEC): ECO103_4157
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Entry
ECO103_4157 CDS
T01096
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
eoh
Escherichia coli O103:H2 12009 (EHEC)
Pathway
eoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECO103_4157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eoh03019
]
ECO103_4157
03400 DNA repair and recombination proteins [BR:
eoh03400
]
ECO103_4157
Enzymes [BR:
eoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECO103_4157
Messenger RNA biogenesis [BR:
eoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECO103_4157
DNA repair and recombination proteins [BR:
eoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ECO103_4157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
MarR_2
Motif
Other DBs
NCBI-ProteinID:
BAI32865
LinkDB
All DBs
Position
complement(4241718..4243814)
Genome browser
AA seq
698 aa
AA seq
DB search
MEKHAAELLLQRMLGNTTATFREGQWEAIDAVVNQRRKLLVVQRTGWGKSAVYFIASKIF
RDRGAGPTIIISPLLALMRNQVAAAERLGITAETLNSTNREEWQRISDKLLQGEVDCLLV
SPERLANQDFIETVLYPIADRIGLLVVDEAHCISDWGHDFRPDYRRILDILRQLPANTPV
LGTTATANNRVVEDIRQQLGDIVIQRGTLARESLALDALVLGEQSSRLAWLATVIPQFSK
SGIVYTLTTRDADLVAEWLRTNGISAFAYYSGVTCEGAEDSNTAREYLEQALLANKIKVL
VATTALGMGFDKPDLGFVIHYQMPGSIVGYYQQVGRAGRAIDSAVGILLCGGEDRAIHKF
FRESAFPAEAQIHEILNVLSENDGLTLRGIEQRTNLRYGQIEKALKLLVAENPSPVVYTE
KLWRRTIVSFSPDHERINHLMNQRKNELADVESYITTKECKMQFLRRALDEPSAERCGKC
SSCLQHPLLSPDIDSGLLHAANLFIKHADLPLNLNKQVASGAFTQYGFKGNLPAGLQGST
GRVLSRWGDSGWGKQVAQEKKTGRFSDELVEACAEMVRQRWNPHPEPTWVCCVPSLRHLD
LVPDFARRLAAKLGLPFIDAIEKVVDNPPQKMQQNRFHQCQNLDGAFVITPPLMPGPALL
VDDIVDSAWTLTVLTALLRQAGCPTVYPLALASTSVKN
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcacgcagctgaattgcttttacagcggatgttaggaaataccaccgctact
ttcagggaagggcaatgggaagccatagacgcggtggtgaaccaacgacgaaaactgctg
gttgtccaacgcactggctgggggaaaagtgccgtgtacttcatcgccagtaaaatcttc
cgcgatcgcggtgctggcccgacaattatcatctctcctttgcttgccctgatgcgtaac
caggttgccgccgctgaacggttaggtattacggctgaaacgttgaattctacaaacagg
gaagaatggcagcgtattagcgataagttgctgcaaggtgaggtcgattgcttgctggtt
tccccggaacgtttggcaaaccaagactttatcgaaacggttttatatcctatagccgat
cgtattggcttgcttgtggtcgacgaggcgcactgcatctctgattggggccacgatttt
cgcccggattaccgacgtatattagatattttgcgccaactgcctgcgaataccccagtt
ctgggtacaaccgcgacagcgaataaccgtgtcgttgaggatatccgtcagcaattgggt
gacattgtgattcagcgtggaacgctggctcgcgaaagtttggcgcttgatgccttagtc
ttaggtgaacagtcatcccgtctggcatggttagcaacggttatccctcagttttccaaa
tcgggaattgtttataccctgactactcgcgatgccgaccttgtcgccgagtggttaagg
acaaatggtatcagtgcatttgcttactacagcggcgtgacttgtgaaggcgcggaagat
tctaatactgccagggaatatctggagcaggcgttgctggcaaataaaattaaagttctg
gtcgcgacgacggcgctgggaatgggctttgacaaaccggatttggggtttgttattcat
taccagatgccggggtctattgtcggttactaccaacaggtagggcgtgccgggcgtgct
atagattccgctgttggcatattgctttgtggtggtgaagaccgcgctattcataaattc
ttccgtgaaagcgcctttcctgcggaggcgcaaattcatgaaatactcaacgtacttagc
gagaatgacggtcttaccctacgaggcattgaacaacggacgaatctccgttatgggcaa
atagaaaaagcactgaaattattggtagctgaaaatccatcgcctgtggtgtataccgag
aaattatggcgcagaactatcgtcagtttctctcctgaccatgaacgaattaaccatttg
atgaatcagagaaaaaatgagctggcagatgttgaaagctatatcacgaccaaggagtgc
aaaatgcaatttctgcgccgcgcactcgatgagccaagtgccgaacgttgtggtaaatgt
agcagttgtcttcagcatccgttgttatcgcccgatattgatagcggcttactccatgcg
gcaaatttatttattaaacacgctgacctgccattaaatctcaataaacaggtagcatct
ggagcttttacgcaatacggatttaaagggaacttgcctgcgggtttacaaggatctacg
gggcgagtcctttctcgttggggagattccggatggggaaagcaggtagcacaggagaaa
aaaacggggcgattcagtgatgagctggtggaggcatgtgcggaaatggttcgccaacgc
tggaatccgcatcctgaaccaacctgggtatgctgcgttccttcattaaggcacctcgac
ctggttcctgattttgcccggcgactggcggcgaaacttggcttaccttttattgatgcc
attgaaaaagtcgtggacaatccaccgcagaaaatgcagcaaaaccgttttcaccagtgt
caaaatctcgacggggcgtttgtgattacccctcctttgatgccaggtccggcgttgctg
gttgacgatatcgtggattctgcatggacgctgacagttctgacagcactgttacgccag
gcaggttgcccgacggtttatcctcttgcccttgcttctacctcggtaaaaaattga
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