Escherichia coli O103 H2 12009 (EHEC): ECO103_5067
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Entry
ECO103_5067 CDS
T01096
Name
(GenBank) predicted helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
eoh
Escherichia coli O103:H2 12009 (EHEC)
Pathway
eoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECO103_5067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eoh03019
]
ECO103_5067
03400 DNA repair and recombination proteins [BR:
eoh03400
]
ECO103_5067
Enzymes [BR:
eoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECO103_5067
Messenger RNA biogenesis [BR:
eoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECO103_5067
DNA repair and recombination proteins [BR:
eoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ECO103_5067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
BAI33746
LinkDB
All DBs
Position
5265547..5268114
Genome browser
AA seq
855 aa
AA seq
DB search
MNLAQLIDNDFISSRLSECLLPEATAGHLDRRALIRDWLYREKHAHHNDNELTVPDDSQP
GWPRQEEWEASGINCQRLGQTFLLSAGPAWCPQWLEQGNGMPFLASDQHQFCRQDTRVPM
DYVLRRYFKKDNYISYQAPGQRDAVRRALFAPPGSTLLVNLPTGTGKTLVAQALALTASA
PGALCVLIAPTTALVLELASRFRKLLIEAGNKAESVTGWYSGLPAQDKYDTYMRIRVGEQ
RLIVTSPEATCSSLQFALFEAAKQGGLRHVIVDEAHIVASWGNDFRPHFQQLGGLIRGLK
RVSREANLTPCSTLLMSATITEASRKILRDTFDQEMSELHACHLRPEPAYWCYRAKDHSD
KRDKVLQSLAHAPRPLILYVTRPKEAEEWAQQLRLQGYQRLATFTGDTPSEVRRSLLEKW
DKNQLDIMIATSAFGVGMDKNDVRTVIHATVPENMDRFYQEVGRGGRDGYACTSLLIYNH
QDVKQAEHLSSQKLIGLELGLERWKKLWGSAESVGDNLYRIDIERIHSGLNFRSKQNKLW
NLRTVLMMVRAGVLELDADLQNPPDKKDFADVNRYEAAKEQIIRQNGNSLVVRILRSHHT
GEELWKTRIIPSREETLQAARANHNALINWLHTPLSRPLCEALVDLYSMAEFIPGHACGG
CPACRDNQALTSNYPSPPTLLLNPPASVAQQALSRWQALSGLSYSSCFITYPPVNDDEWE
RENWYHRIATLLVQLYHRGIVQRVWADPALLHSIFSAIPRGERLILLSDELPARDEPAPD
NDVMAELAELVLPTQESCANGYLPPFNPAPLQLTLIPHDMPDPHHPGGAHYVLLDNHNWI
TIEQLQRKLDSVDYQ
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgaatttggcgcaactgattgataatgattttatttcatcaaggttgagtgagtgcctg
ctgccagaggcgactgccggacacctcgaccgccgggcgttgatccgtgactggctgtac
cgggaaaaacatgcccaccacaacgataacgagctgaccgtccctgatgatagccaacct
ggttggccaagacaggaggagtgggaagccagcggtattaactgtcaacgactaggtcag
acctttctgctcagcgctggccctgcttggtgtccgcagtggctggagcagggaaacggc
atgccttttctcgccagcgatcagcaccaattctgccgccaggacactcgagtaccgatg
gactatgtcctgcgccgttacttcaagaaggacaactatatcagctatcaggcaccgggc
cagcgcgatgcggtacgccgggctctgttcgccccaccgggcagtacgctgttggtcaat
ttgcccacaggcaccgggaaaacactggtagcgcaagcattagctctgacagcctcagct
cccggggcactttgtgtactgatcgccccgaccacggcgctggtgttggagctggctagc
cgtttccggaagttactgattgaagcagggaacaaagcagaatctgtcaccggctggtat
agcggcttaccggcgcaggataaatatgatacgtacatgcgtatccgtgtgggtgagcag
cggctgatcgtcacctctcctgaagcgacctgcagttccctgcagttcgccttatttgaa
gcagcaaaacagggagggctgcgccatgttattgttgatgaagcgcatattgtcgccagc
tgggggaacgactttcgcccgcatttccagcaacttggtggcttaattcgtgggctgaag
cgcgtcagccgtgaagcgaatcttacaccgtgctcaacactgctgatgagtgcgactatc
accgaagccagccgtaaaatcctgcgcgataccttcgatcaggagatgagcgaactccat
gcctgccatctgcgcccggaacctgcttactggtgttatcgggcaaaagaccacagcgac
aaacgggataaggtgctgcaatcgctggctcatgcgccacgcccgctgatcctctacgtg
acgcgaccgaaagaagctgaagagtgggcgcaacagttgcgtttgcaggggtatcagcgt
ttggcaacatttaccggtgatacaccgagtgaagtacgccgaagcctgctggaaaaatgg
gataaaaaccagctggatatcatgattgcgacctcagcatttggcgtaggtatggataaa
aacgacgtgcgcacagtgatccatgccacagtgccggaaaacatggaccgcttctaccag
gaagtgggacgtggtggacgcgatggctatgcctgcacctcactgctaatttacaatcat
caggatgtcaaacaggcagaacatctgtcctcacaaaagttgattggtcttgagttgggc
ctggaacgctggaaaaagttatggggcagtgccgaatcggtgggcgacaacctgtatcgt
attgatatagagaggatccatagcggccttaatttccgcagcaaacaaaataaattatgg
aacttgcgtaccgtactgatgatggtgcgtgcaggagtgctggaactggatgccgatcta
caaaacccgccagacaaaaaagactttgccgatgttaatcgctacgaagcggcaaaagag
caaatcatccgacagaacggaaattcactggtagtacgcatcctgcgtagtcaccacacc
ggagaagaattgtggaaaacacgtattatcccttcccgtgaagagacgctgcaagctgca
agggctaaccataatgcattaatcaactggctgcatacgccactgagcagaccgctgtgt
gaggcacttgtagatctctactccatggcggaatttattccgggtcacgcctgtggtggt
tgccctgcctgtcgcgataatcaggcgcttactagtaattatccgagcccaccgacgctg
ttgcttaacccgccagcgtcggtggcacagcaggcgttaagccgctggcaggcgctcagc
ggcctatcttactccagttgctttatcacctatccgccagttaacgacgatgagtgggaa
cgtgagaactggtatcaccgcatcgcgacgctactggtgcaactgtatcatagaggcatt
gtccagcgcgtctgggcagatcctgccttgttgcatagtatatttagcgccattccgcgc
ggtgagcgcctgatcttgttgagtgacgaattgcctgcacgtgatgagccagcgccggat
aacgatgtaatggccgagttggcagagttggtacttcccactcaagagtcctgcgccaat
ggttacctgccgcctttcaacccagcaccattacaactgacgctgatcccgcatgatatg
cccgatcctcaccatcctggcggggcgcattacgttcttctcgataatcacaattggatc
accatcgaacaacttcaaaggaaactagacagtgtcgattatcaataa
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