Escherichia coli O26 H11 11368 (EHEC): ECO26_2012
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Entry
ECO26_2012 CDS
T01098
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
eoj
Escherichia coli O26:H11 11368 (EHEC)
Brite
KEGG Orthology (KO) [BR:
eoj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eoj03019
]
ECO26_2012 (hrpA)
Enzymes [BR:
eoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECO26_2012 (hrpA)
Messenger RNA biogenesis [BR:
eoj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECO26_2012 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
BAI25290
LinkDB
All DBs
Position
1957204..1961049
Genome browser
AA seq
1281 aa
AA seq
DB search
MLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPV
SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVA
NRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEA
HERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTE
ILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNAFRRLCRIDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEY
REIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRL
WGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQ
IDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEFY
DQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKL
RLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPVRRNFV
PAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDK
NKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVK
AWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYF
NPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQI
LTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKR
LEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEIRWMIEELRVSYFAQQ
LGTPYPISDKRILQAMEQISG
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgacagactgcgtttttctcggcgtctgcacggtgttaagaaggttaaaaat
cctgatgcacaacaggccattttccaggagatggcgaaagagattgaccaggcggcaggg
aaagtcctgctgcgtgaagcggcacgaccggaaattacttatcctgacaatttaccggtt
agtcagaaaaaacaggacattctcgaagcgattcgtgatcaccaggtggtgatcgtcgcc
ggggaaacgggttctggtaaaacgactcagttaccgaaaatctgtatggagctggggcgc
gggattaaagggctgatcggccatacccagccgcgtcgcctggcggcaagaacggtggcg
aaccgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgt
ttcagcgatcacgttagtgataacacgatggtcaagctgatgaccgacggtatcctgctg
gcggagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagca
cacgaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcgg
cgtcctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgc
cactttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgc
tatcgaccgattgttgaagaagccgacgacaccgagcgcgatcagttgcaggcgattttt
gacgccgtagacgaactgagtcaggaaagccctggcgacattctgatctttatgagtggt
gagcgggaaattcgcgataccgccgatgcgctgaacaagctaaatctgcgtcataccgaa
atcttgccgctttatgcgcggctttcgaacagcgaacagaaccgcgtgttccagtcgcac
agcggacggcgcattgtgctggcgaccaacgtcgcggaaacctcgctgaccgtaccgggg
attaaatacgttatcgaccccggtacagcacgtatcagccgctacagctatcgcaccaaa
gtgcagcgtttgccgattgaacccatttcgcaggcgtctgccaatcagcgtaaaggccgc
tgtgggcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctttcg
cgcccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcag
atgaccgcgctggggctgggcgatatcgctgcgttcccgtttgtcgaagcaccggataaa
cgcaatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaa
caggccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgat
ccacgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatg
attatcacgtccgcgctttccattcaggatccgcgcgagcgtccgatggataaacagcag
gcatcggacgaaaaacatcgtcgcttccacgacaaagagtctgacttcctcgcgtttgtg
aatctgtggaattatcttggcgagcagcaaaaggcgctttcttccaacgccttccgtcgc
ctgtgtcgtatcgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacc
cagttgcgccaggtggtgaaagaacttggcattccggttaacagcgaaccggcggagtat
cgcgaaattcacattgcgttgctgacgggtttactttcccatatcggcatgaaagatgcc
gataaacaagaatataccggcgcacgtaacgcgcgtttctccatctttcccggttctggt
ttattcaaaaaaccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctg
tgggggcgcattgctgcgcgtatcgacccggaatgggtggagcctgtcgctcagcatttg
attaaacgcacctacagcgaacctcactgggaacgggcgcagggcgcggtgatggcaacg
gaaaaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccag
atcgatccggcgttatgccgtgaactctttattcgccatgcgctggtggaaggtgactgg
cagacgcgtcacgcattcttccgtgaaaacctgaaactgcgggccgaagtggaagagctg
gaacacaaatcacgtcgccgcgatattctggttgatgacgaaacgttgtttgagttctac
gaccagcgcatcagccacgatgtaatctccgctcgtcacttcgacagctggtggaaaaaa
gtcagccgcgaaacccctgatttgctcaactttgaaaaaagcatgttgatcaaagagggc
gcagaaaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctg
cgtttgagctatcagtttgagcccggcgcggatgctgacggtgtgaccgtacatattccg
ctgccgttacttaaccaggttgaggaaagcgggtttgaatggcagatccccggtctgcgc
cgcgaactggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgta
cccgcgccaaactatgccgaagcgtttttaggccgcgtcaaaccgctggagttaccgttg
ctcgacagccttgagcgcgagttacggcggatgaccggcgttaccgttgaccgcgaagac
tggcactgggatcaggtgcctgatcacctgaaaattaccttccgcgtggtggatgacaaa
aacaagaagctaaaagaagggcgctcgctacaagatctgaaagatgcgctgaaaggcaaa
gtgcaggaaacgctatctgcggtggcggatgacggtatcgagcagagcggcttacatatc
tggagttttggtcagctgccggaaagctacgaacagaagcgtggcaactacaaagtgaag
gcgtggccggcgctggtggatgagcgcgacagtgtggcgatcaaactgtttgataacccg
ctggagcaaaagcaggcaatgtggaacggtcttcgccgtctactgctgctgaatattcca
tcgccaatcaaatatttacatgaaaagttaccgaacaaagccaagctgggactgtacttt
aacccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggtgtggatcaa
ttgatcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgaa
aaagtgcgcgccgaactgaatgacacggtggtggatattgcgaagcaggtcgagcaaatc
ctcactgcggtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggca
ctggggctttctgacattaaagcgcagatgggcgggttggtatatcgcggttttgtcact
ggtaacggcttcaaacggctgggcgacacgctgcgatatttgcaggcgattgaaaaacgg
ctggaaaaactggcggttgatccacatcgcgaccgtgctcagatgctgaaagtcgaaaac
gtccagcaggcgtggcagcaatggatcaacaaactgccgcccgcacgtcgtgaggatgaa
gacgtgaaagagatccgttggatgatagaagagttgcgcgttagttacttcgctcaacaa
cttggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagc
ggttaa
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integrated database retrieval system
