Escherichia coli O55 H7 CB9615 (EPEC): G2583_1771
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Entry
G2583_1771 CDS
T01190
Symbol
hrpA
Name
(GenBank) HrpA-like helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
eok
Escherichia coli O55:H7 CB9615 (EPEC)
Brite
KEGG Orthology (KO) [BR:
eok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eok03019
]
G2583_1771 (hrpA)
Enzymes [BR:
eok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G2583_1771 (hrpA)
Messenger RNA biogenesis [BR:
eok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G2583_1771 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ADD56348
LinkDB
All DBs
Position
1803361..1807263
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGK
VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWFNKLPPARREDED
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattgacctttacggccttgcagcagcggctggattcgctgatg
ctgcgtgacagactgcgtttttctcgccgtctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccattttccaggagatggcgaaagagattgaccaggcggcagggaaa
gtcctgctgcgtgaagcggcacgaccggaaattacttatcctgacaatttgccggttagt
cagaaaaaacaggacattctcgaagcgattcgtgatcaccaggtggtgatcgtcgccggg
gaaacgggttctggtaaaacgactcagttaccgaaaatctgtatggagctggggcgcggg
attaaagggctgatcggccatacccagccgcgtcgcctggcggcaagaacggtagcgaac
cgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgtttc
agcgatcacgtaagtgataacacgatggtcaagctaatgaccgacggtatcctgctggcg
gagatccagcaagaccgcctgctgatgcagtacgacactatcattattgacgaagcgcac
gaacgtagcctgaatatcgattttctgctcggttatttgaaagagttgctgccgcggcgt
cctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgccac
tttaataatgcgccgattattgaagtctccggtcggacctatccggtggaagtgcgctat
cgcccgattgttgaagaagccgacgacactgagcgcgaccagttgcaggcaattttcgat
gccgtggacgaactaagccaggaaagccccggcgacattctgatctttatgagcggcgag
cgggaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaaatc
ttgccgctttatgcgcggctttcgaatagcgaacagaaccgcgtgttccagtcgcacagc
gggcgacgcattgtgctggcgaccaacgtcgcggaaacctcgctgactgtaccggggatt
aaatacgttatcgaccccggtacggcgcgtatcagccgctacagctatcgcaccaaagtg
cagcgtttgccgattgagcccatttcgcaggcgtctgccaatcagcgtaaaggccgctgt
ggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctctcgcgc
ccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcagatg
accgcgctggggctaggcgatatcgctgcgttcccgtttgtcgaagcaccggataaacgc
aatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaacag
gccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgaccca
cgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatgatt
atcacgtctgcgctctccattcaggatccgcgcgaacgtccgatggacaaacagcaggca
tcggacgaaaaacatcgtcgcttccacgacaaagagtctgacttcctcgcgtttgtgaat
ctgtggaattatcttggcgagcagcaaaaggcgctttcttccaacgccttccgtcgcctg
tgtcgtaccgattatctcaactatctgcgtgtgcgcgaatggcaggatatctacacccag
ttgcgccaggtggtgaaagaactcggcattccggtgaacagcgaaccggcggagtatcgt
gaaattcacattgcgttgctgacggggttgctttcccatatcggcatgaaagatgccgat
aaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttctggttta
ttcaaaaaaccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctgtgg
gggcgcattgctgcgcgtatcgacccggaatgggtggagcctgtcgctcagcatttgatt
aaacgtacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacggaa
aaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccagatc
gatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactggcag
acgcgtcacgcattcttccgtgaaaacctgaaactgcgggccgaagtggaagagcttgaa
cacaaatcacgtcgccgcgatattctggttgatgacgaaacgctgtttgagttctacgac
cagcgcatcagccacgatgtaatctccgctcgtcacttcgacagctggtggaaaaaagtc
agccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggggcg
gaaaagatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctgcgt
ttgagctatcagtttgagcccggcgcggatgctgacggtgtgaccgtacatattccgctg
ccgttacttaaccaggttgaggaaagcgggtttgaatggcagatccctggtctgcgccgc
gaactggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgtacct
gcgccaaactatgccgaagcgtttttaggccgcgtcacaccgctggagttaccgttgctc
gacagccttgagcgcgagttacggcggatgaccggcgttaccgttgaccgcgaagactgg
cactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggatgacaaaaac
aagaagctaaaagaagggcgctcgctacaagatctgaaagatgcgctgaaaggcaaagtg
caggaaacgctatctgcggtggcggatgacggtatcgagcagagcggcttacatatctgg
agttttggtcagttgccggaaagctacgaacagaagcgtggtaactacaaagtgaaggcg
tggccggcgctggtggatgagcgcgacagtgtggcgatcaaactgtttgataacccgctg
gagcaaaaacaggcaatgtggaacggtcttcgccgtctactgctgctgaatattccctca
ccaatcaagtatttacatgagaagttaccaaacaaagccaagctggggctgtactttaac
ccgtatggcaaagtgctggagctgatcgacgactgtatctcatgcggtgtggatcaactg
atcgacgccaatggaggcccggtctggacggaagaaggctttgctgcgctgcatgaaaaa
gtgcgtgccgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatcctt
acggcagtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcgctg
gggctttctgacattaaagcgcagatgggcgggttggtatatcgcggttttgtcactggt
aacggcttcaaacggctgggcgacacgctgcgttatttgcaggcgattgaaaaacggctg
gaaaaactggcggttgatccacatcgcgatcgtgcacagatgctgaaagtcgaaaacgtc
cagcaggcgtggcagcaatggttcaacaaactcccgcctgcacgtcgtgaggatgaagac
gtgaaagagatccgttggatgatagaagagctgcgcgttagttacttcgctcaacaactt
ggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagcggt
taa
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