Escherichia coli O55 H7 CB9615 (EPEC): G2583_3888
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Entry
G2583_3888 CDS
T01190
Symbol
pnp
Name
(GenBank) Polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
eok
Escherichia coli O55:H7 CB9615 (EPEC)
Pathway
eok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G2583_3888 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eok03019
]
G2583_3888 (pnp)
03016 Transfer RNA biogenesis [BR:
eok03016
]
G2583_3888 (pnp)
Enzymes [BR:
eok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
G2583_3888 (pnp)
Messenger RNA biogenesis [BR:
eok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
G2583_3888 (pnp)
Transfer RNA biogenesis [BR:
eok03016
]
Prokaryotic type
tRNA degradation factors
G2583_3888 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_RRP5_4th
S1_RRP5
aRib
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
ADD58374
LinkDB
All DBs
Position
complement(3940215..3942419)
Genome browser
AA seq
734 aa
AA seq
DB search
MRRRSGINTSAVRYCLRKRKDITLLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDD
TAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDR
PIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI
NDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQ
NINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSET
IATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRT
HGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPK
RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI
KAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKE
IMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIR
ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGA
FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ
PAAAPEAPAAEQGE
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagaagatcgggtattaacaccagtgccgtaaggtactgtctaagaaagagaaag
gatattacattgcttaatccgatcgttcgtaaattccagtacggccaacacaccgtgact
ctggaaaccggcatgatggctcgtcaggctactgccgctgttatggttagcatggatgac
accgcggtatttgttaccgttgttggccagaaaaaagccaaaccaggtcaggacttcttc
ccactgaccgttaactatcaggagcgtacctacgctgctggtcgtatcccgggtagcttc
ttccgtcgtgaaggtcgtccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgc
ccgattcgcccgctgttcccggaaggcttcgtcaacgaagttcaggttatcgccaccgtg
gtttctgttaacccgcaggttaacccggatatcgtcgcgatgattggtgcttccgcagca
ctgtctctgtctggtattccgttcaatggcccgattggtgctgcccgtgtaggttacatc
aatgaccagtacgtactgaacccgactcaggacgagctgaaagagagcaaactggatctg
gttgttgcgggtactgaagccgctgtactgatggttgaatctgaagctgaactgctgagc
gaagaccagatgctgggcgcagtagtgttcggtcatgaacaacagcaggttgttattcag
aacatcaatgaactggtgaaagaagccggtaaaccgcgttgggactggcagccggagccg
gtaaacgaagcgctgaacgcgcgcgttgctgcactggctgaagctcgtctgagcgatgct
taccgcatcaccgacaaacaagagcgttatgcgcaggttgatgtcatcaaatctgaaacc
atcgcgacgctgcttgctgaagacgaaaccctggacgaaaacgaactgggtgaaattctg
cacgcgatcgagaaaaacgttgttcgtagccgcgtactggcaggcgaaccgcgtatcgat
ggtcgtgaaaaagatatgatccgtggtctggatgtgcgtactggcgtgctgccgcgtact
cacggttctgcgctgttcacccgtggtgaaacgcaggcgctggttaccgcaacgctgggt
actgctcgtgacgcgcaggttcttgatgaactgatgggcgaacgtaccgataccttcctg
ttccactacaacttccctccgtactccgtaggcgaaaccggcatggtcggttctccgaag
cgtcgtgaaattggtcacggtcgtctggcgaagcgcggcgtgctggcagtaatgccggat
atggacaaattcccgtacaccgtacgtgttgtgtctgaaatcactgaatccaacggttct
tcttctatggcttccgtgtgcggtgcgtctctggcgctgatggacgcaggtgtgccaatc
aaagctgccgttgcgggtatcgcaatgggtctggtgaaagaaggcgacaactacgttgta
ctgtctgacattttgggcgacgaagatcacctgggcgatatggacttcaaagttgcgggt
tcccgcgacggtatctctgcactgcagatggatatcaaaattgaaggtatcaccaaagag
atcatgcaggttgcactgaaccaggctaaaggtgcgcgtctgcacatcctgggtgtaatg
gaacaggcgatcaacgcgccacgtggcgatatctctgagttcgctccgcgtatccatacc
atcaagatcaacccggacaagatcaaagacgttatcggtaaaggcggctctgtgatccgt
gccctgaccgaagaaactggcaccaccatcgaaatcgaagatgacggtactgtgaagatc
gcagcgaccgatggcgagaaagcgaaacacgctattcgtcgtatcgaagagatcactgca
gaaattgaagtgggccgcgtctacactggtaaagtgacccgtatcgttgacttcggcgca
tttgttgccatcggcggcggtaaagaaggtctggtccacatctctcaaatcgctgacaaa
cgcgttgagaaagtgaccgattacctgcagatgggtcaggaagtaccggtgaaagttctg
gaagttgatcgccagggccgtatccgtctgagcattaaagaagcgactgagcagtctcaa
cctgctgcagcaccggaagctccggctgctgaacagggcgagtaa
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