Emticicia oligotrophica: Emtol_2427
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Entry
Emtol_2427 CDS
T02272
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eol
Emticicia oligotrophica
Pathway
eol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Emtol_2427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eol03019
]
Emtol_2427
Enzymes [BR:
eol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Emtol_2427
Messenger RNA biogenesis [BR:
eol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Emtol_2427
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
UTP25_NTPase-like
Cas3-like_C_2
PhoH
Motif
Other DBs
NCBI-ProteinID:
AFK03563
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All DBs
Position
complement(2514433..2515779)
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AA seq
448 aa
AA seq
DB search
MTFNELNLNKQLINALDDLGYTTPTTIQQKVFSVVMSGKDVCGIAQTGTGKTFAYLLPSL
RQYQFSKEKMPQVLIIVPTRELVVQVVESIQKITTYMSVITVGVYGGVNIKPQILDIQNG
VDILVGTPGRLIDLLSSGFIKTKSLKKLIIDEVDEMLNLGFRPQLKNILDLLPARRQNLL
FSATITEEVEQIIETYFNEPMRVEAAPAGSPLENISQTLYHVPNFNTKVNLLELLLMDDD
SMSKVLIFAATKELADQLYNRIERKYGEKVGIIHSNKAQNTRFNTVKAFQEGSCKMLIAT
DIIARGIDIAEVSHVINFDIPEVPENYIHRIGRTGRVDKKGIAITFMTPKEIEQIDAIEE
MMNYEIPVAELPENLTISDVLTEAEMPQVKMKNVLVKAPKREDVGPAFHEKLAKNKKVNV
RRDIKAEKWAKYGRPIKKSGNKPKRGDR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgactttcaacgaattaaatctcaataaacaactcatcaatgccctcgacgacttgggc
tatacaacgccaactaccattcagcagaaagttttctcggtggtaatgtcgggtaaagat
gtttgcggaattgcccaaactggaacaggaaaaacttttgcttatttattgccaagttta
cgccaatatcagttttcgaaagaaaaaatgcctcaagtactcatcattgttcctacacgt
gagctggtagtacaggtggtagaatctattcagaaaattacaacctacatgagtgtcata
accgtgggtgtgtatggtggggtaaacatcaagcctcaaattttagacattcagaatgga
gtagatattttggtaggaacacctggccgtttgattgatttgctttcgagtggttttatt
aaaaccaaatctctcaaaaaactaatcattgatgaagtagatgaaatgctcaatctgggt
tttcgtcctcaactcaaaaacattcttgatttattgccagctcgccgccaaaatttgctt
ttttcggctacaattaccgaagaagttgagcaaatcattgaaacatacttcaacgaacct
atgagagtagaagctgcaccagcgggttcgccattagagaatatttcgcagacgctctac
catgtaccaaatttcaatacaaaagtaaatttactcgaattgcttttaatggacgacgac
agcatgagtaaagtattaatttttgcagcaaccaaggaattagccgaccaactttataac
cgaattgaaagaaaatacggcgaaaaagtaggcattattcactcaaataaagcacaaaat
acgcgtttcaacaccgtaaaagcttttcaagaaggaagttgtaaaatgctcattgccacc
gatatcattgctcgtggtatagatatcgctgaggtttcgcacgttattaattttgatatt
cctgaagtgcccgaaaactacattcaccgcatcggtcgtacggggcgtgtcgataaaaaa
ggtatcgccatcactttcatgactccaaaagaaattgagcaaattgatgccattgaggag
atgatgaactacgaaattcctgtagctgaattacccgaaaacctcacaatttcagatgta
ttgaccgaagccgaaatgccacaggtaaagatgaaaaatgtgttggtaaaggccccaaaa
cgagaagatgttggtccggcttttcatgaaaaactggccaaaaataaaaaagtgaatgta
agacgcgatattaaggccgaaaaatgggcaaaatatggccgacctattaaaaaatctggc
aataaacctaaacgtggcgatagataa
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