Emticicia oligotrophica: Emtol_2646
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Entry
Emtol_2646 CDS
T02272
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
eol
Emticicia oligotrophica
Pathway
eol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Emtol_2646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eol03019
]
Emtol_2646
03400 DNA repair and recombination proteins [BR:
eol03400
]
Emtol_2646
Enzymes [BR:
eol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Emtol_2646
Messenger RNA biogenesis [BR:
eol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Emtol_2646
DNA repair and recombination proteins [BR:
eol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Emtol_2646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
BUD22
HTH_40
Helicase_Sgs1
CDC45
Motif
Other DBs
NCBI-ProteinID:
AFK03782
LinkDB
All DBs
Position
complement(2805956..2808334)
Genome browser
AA seq
792 aa
AA seq
DB search
MVDAAIQQTLKEKLKEIFGFDAFRGEQEPIIHNIVSGKNTFVIMPTGAGKSLCYQLPAMV
LDGTAIVISPLIALMKNQVDQMSAFGINAQFLNSTLNKSEMTRVKNDVMSGDCKLLYIAP
ESLTKEDNLTFLKKAKLSFIAVDEAHCISEWGHDFRPEYRRIRGIIDDIDPNLPIIALTA
TATPKVQQDIQKNLSMEQSHIFKSSFNRKNLYYEIRPKIDSKKQLIKYIANNKGKSGIIY
CLSRKKVEEIAGLLNVNGIKALPYHAGLDADTRMKNQDAFLNEECDIIVATIAFGMGIDK
PDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCLMFYAYDDILKLEKFNKDKTVTERDN
ARALLMEMVAYSNLGVCRRRQLLSYFGEYTDKDCGFCDNCIKPTKKIKIEDEAVLGLKAI
IQSGERFDVQHIADILTANTSNPYIRSYEHDKLEVYGKGKGMFVAHDEDDEDDEEEEEEV
ELELSEEDEEDEETKPVAAKSSKPSKKAEKPTKKSDNKRTANDYWVSILRQMMVLGYIEK
DIENSYGVVRVSEKGHKFIEDSYPITIAEDHNYENTESSDDDDITTNNSSSGGGAFDAAL
FELLKALRKKIAKEKNVPPYVVFQDPSLEEMATTYPTTQQELAQINGVGMGKVQKFGKPF
LDLITKYVDDNEIETTQDLVVKSAVNKSKIKIYIIQQIDRKINLDEIVEAKDLTMAELIE
EIEHICYSGTRLNLDYYINQVIDPERQDEIYDYFMSAETDNIAVALKEFESDDITEEELR
LMRIKFLSEMAN
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggtagacgcagcgatacaacagaccttaaaagaaaaactaaaagaaatctttggcttt
gacgccttcagaggcgaacaagagcccattatccataacattgtgagcggtaaaaacaca
tttgtgattatgccaactggggcaggaaaatcactttgttaccagctaccagcaatggtt
ttggatgggactgctattgttatttcgccactgattgctctcatgaaaaaccaagttgac
caaatgtcagcttttggaatcaatgctcagtttttaaactcgactctcaataagtcggaa
atgacccgtgtgaagaatgatgtaatgagcggcgattgtaaattattatacattgcaccc
gaatcattaaccaaagaagataatcttacattcttgaaaaaagccaagctttcgtttatt
gcggtagatgaagctcactgtatttcagaatggggccacgatttcagacctgaataccgt
agaatcagaggtattattgatgatatcgacccaaatcttccaattattgcccttacagct
acggccaccccgaaagtccagcaggatattcagaaaaaccttagtatggagcaatcgcat
atcttcaagtcttcatttaatcgtaagaatctctattacgaaatccgaccgaagattgac
tctaagaagcaacttatcaagtatattgccaacaacaaaggtaaatcaggtattatttat
tgcttgagccgtaagaaagttgaggaaattgctgggttattaaatgtcaatggtattaag
gccttgccttatcatgcaggtttagatgccgatactcgcatgaaaaaccaagatgcattc
ttaaatgaagaatgtgatataattgttgctacgattgcttttggaatgggtattgataaa
cccgatgttcgcttcgtaattcactatgatgcaccgaaatcgctcgaaggttattatcag
gaaactggccgagcgggtcgtgatggcctagagggcaactgcttgatgttctatgcttat
gatgacattctgaagttagaaaaattcaataaagataaaacagttactgaaagagataat
gctcgtgcattgcttatggagatggtggcttattcaaacttaggtgtttgccgtcgtcgt
cagttactcagctattttggtgaatatacagataaagactgcggtttctgcgataactgt
atcaagccaaccaaaaaaataaaaatcgaagatgaagccgtactcggcttgaaagcaatc
atccagtcgggcgaaagatttgatgttcaacacattgccgatatcttaacagcgaataca
tcaaacccatatattcgcagctacgaacacgataaactagaagtttatggtaaaggaaaa
ggcatgtttgttgcccatgatgaagatgacgaagacgatgaggaagaagaagaagaggta
gaattagaattgtcagaagaagatgaggaggatgaagaaacaaaacctgttgctgcaaaa
tcttctaaacctagcaaaaaagccgagaagcctactaagaaatccgataataagcgtact
gctaatgattattgggtatcaatccttcgccaaatgatggtgctgggctatattgaaaaa
gatattgagaatagctacggtgtagtaagagtttcagaaaagggtcataaattcatcgaa
gattcttatccaatcactattgcagaagaccataactacgaaaatactgaaagtagtgat
gatgacgatattacaaccaataatagttcttcgggcggaggtgctttcgatgcggcatta
tttgaattattaaaagctcttcgtaaaaaaattgccaaagagaaaaacgtaccaccttat
gtagtattccaagacccttcgcttgaagaaatggctactacctaccctacaactcaacaa
gagttagcccaaataaatggcgtaggtatgggtaaagtacagaaatttggcaaacctttc
ctcgacttaattacgaagtatgttgatgacaacgagattgaaactactcaagatttagtg
gtaaaatcagctgtaaataaatcgaagattaagatttatattattcaacaaatcgaccgt
aagattaacctcgatgaaattgttgaggcaaaagaccttacgatggctgaattaattgag
gaaatcgaacatatttgttattcgggcacacgtctgaatctcgactactacattaatcaa
gtcattgacccagaacgccaagatgaaatctacgattacttcatgtcggcagaaacagat
aatatcgcagtagctttgaaagaatttgaaagcgatgatattacagaagaagaacttcga
ttgatgcgtattaaattcttatcagaaatggccaattaa
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