Emticicia oligotrophica: Emtol_3578
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Entry
Emtol_3578 CDS
T02272
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eol
Emticicia oligotrophica
Pathway
eol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Emtol_3578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eol03019
]
Emtol_3578
Enzymes [BR:
eol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Emtol_3578
Messenger RNA biogenesis [BR:
eol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Emtol_3578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFK04704
UniProt:
A0ABN4AR44
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All DBs
Position
3915868..3917121
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AA seq
417 aa
AA seq
DB search
MQFNEFNLHDDVLSGIDAMSYLQATPIQEQAIPIILSGKDLIASAQTGTGKTAAYLIPIL
DFIARNPSDYTTALILVPTRELAKQIDEQIEGFSYFVSATSIAIYGGGKGEDWNQQRKAL
VNGADIIIATPGRLMAQIKTGEINFENLKCLVLDEADKMLDMGFAEDILFVIKHLPIQRQ
NLMFSATMPKKIRDFANKILKTPEEIRLSVSKPAVGIDQQFYLASDEQKLPLLLHLMKNT
EAESVIIFSSQKSMIDKVVRSLNRNNIESKGISSDISQEEREESLRGFKNKQFKVLVATD
VLSRGIDINNLNLVINIDVPRDAEDYIHRIGRTARAETTGTAITFINEKDQYRVANIEKL
LEREVEKLNITESLGFGKAPEYNPSLGRKKNRNSKPNKKGSFNKKRFDKPKKIQTTT
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
ttgcaatttaacgaatttaacctacacgacgatgtcttatcgggtatcgatgcaatgagc
tatttgcaggctacccctattcaagaacaagctattcctattatactttctggtaaagat
ttaattgcttcagcccaaacaggcacgggtaagacagcggcctatttaattccaatttta
gatttcattgctcgtaatccaagtgattatactactgcgttaattttagttcctacgaga
gaactagctaaacaaattgatgagcaaatagaaggatttagttatttcgtttcagcaaca
agtattgcaatttatggcggtggcaaaggcgaagattggaatcaacaacgcaaggcctta
gttaatggagcagatatcattattgctacgcctggtcgattaatggctcagataaaaact
ggtgaaataaattttgaaaacttaaagtgtttagttttagatgaagcagataaaatgctt
gatatggggtttgcagaagatattttatttgtcatcaagcatttacctattcaaagacaa
aatttgatgttttcggcaacaatgcccaagaaaattagagactttgccaataaaatctta
aaaactccagaagagattcgtttatcagtctctaaacctgcggtgggtattgaccaacaa
ttctatttggcttccgacgaacaaaagcttcctcttttattgcatttaatgaaaaatact
gaagcggaatcggtcattattttttcttctcagaaatcaatgattgataaagttgttaga
agtctcaaccgaaataatattgaatctaaaggaatttcatctgatatttcacaagaagaa
agagaagagtcattacgaggttttaagaataaacaatttaaagtattggttgccaccgat
gtactttcaagaggtattgatattaacaatttgaatttagttatcaatattgatgtacct
cgtgatgcagaagattatattcacagaataggcagaactgctagagcagaaacaactggt
acggccattacatttattaacgaaaaagaccaatatagggttgcaaatattgaaaagctt
ttagaacgagaagttgaaaagttaaatattacagaaagtttaggttttggtaaagcacct
gaatacaatccttcgcttggaagaaagaaaaatagaaactctaaaccgaataagaaaggc
tcgttcaataaaaaacggtttgataaaccaaagaaaattcaaactaccacataa
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