Emticicia oligotrophica: Emtol_3603
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Entry
Emtol_3603 CDS
T02272
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
eol
Emticicia oligotrophica
Pathway
eol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Emtol_3603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eol03019
]
Emtol_3603
03400 DNA repair and recombination proteins [BR:
eol03400
]
Emtol_3603
Enzymes [BR:
eol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Emtol_3603
Messenger RNA biogenesis [BR:
eol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Emtol_3603
DNA repair and recombination proteins [BR:
eol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Emtol_3603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
HTH_40
RecQ_Zn_bind
ResIII
RSD-2
Cas3-like_C_2
Orbi_VP7
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AFK04729
LinkDB
All DBs
Position
complement(3949877..3952024)
Genome browser
AA seq
715 aa
AA seq
DB search
MTKEEVLKKYFGYDSFRPLQAEIIETIIAQKDCMVLMPTGGGKSICFQVPAMVMPGITLV
ISPLIALMQDQVQALKSNGIPAAFLNSTLSTIEQRTIEEDCKNGSLKLLYISPEKLFSNN
YLGFIKTLNVNQIAIDESHCVSTWGHDFRPEYIQLKALKDTFPNVPMVALTATADRVTRK
DILNQLGIPEALIFISSFDRPNLNLRVLPGRNRLKVIHEFIAKRTNQSGIIYCLSRKNTE
DVAEGLRKLGIRAMHYHAGLDAQTRAEVQDAYIKDEIQVIVATIAFGMGIDKSNVRFVIH
YSLPSNVESFYQEIGRAGRDGMKSDTLLFYSFGDIITRKEMIQKSELPDEMKEVQLAKLE
RMKQYAESEICRRRVLMSYFNEETNNDCGNCDVCQNPPQRFDATIFAQKALSAIARAEQK
AAMGMLIDILRGSQNRSIYEKGFQNLKTFGVGKELKYEEWAEYITQMLNSGIVDIAYDEH
HYLKLNPVSWQVLKNERKVELVRFEPYDVKKARLDEDVPRERTKKDVIKDALFEKLRILR
KKIAEEQNIPPFVVFSDATLSDMAQKRPINRFQMMAVSGVGEQKFRMYGDEFINEILRFS
GENPTIARAKQEKGMTFLETFEMYKNGLTLEEMAAKRSLNPVTIVSHLVKLFEDGQEVDL
WQYIMKYEYNQIIAEAIKMNIQKGDAIKPLFEALEGIYDYGKLRIALAIWAKQNV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgactaaagaagaagttttaaagaaatattttggttacgattcattccgtccactacaa
gctgaaattatagaaactattattgcccaaaaagactgtatggttttaatgccaacgggt
ggtggtaaatctatttgttttcaagttcccgcaatggtaatgcctggcattacattggtc
atttctccacttattgcattgatgcaagaccaagtacaagccctaaaatcaaatggaata
cctgcagcttttttaaatagtacgctttcaacaatcgaacagagaaccattgaagaggat
tgtaaaaatggttccttaaaactcctgtatatctcgcccgaaaaactattttcaaataat
tatcttggatttatcaaaaccctcaatgtgaatcagatagccattgatgaatctcactgt
gtatctacttgggggcatgattttagacccgaatatattcaattaaaagctttaaaagat
actttccccaatgtaccaatggtagctttaacagctacggccgatagagtgacaagaaag
gatattttaaatcaattagggattcctgaggcacttatattcatatcatcgtttgatagg
ccaaacttaaatctccgagttttaccgggacgaaatagacttaaagtaatccatgaattt
attgccaaacgcactaatcagtcgggaattatatattgtttgagtagaaaaaacacggaa
gacgttgcagaaggattaagaaaattaggcataagagcaatgcattatcatgctggccta
gatgcacaaacacgtgctgaagtacaagacgcctatataaaagatgaaatccaagtcatc
gtagcaacaatcgcctttggtatggggatagacaaatctaacgtgagatttgtgattcat
tatagtttaccctcaaatgtagaaagtttttaccaagaaattggtagagcaggcagagat
ggtatgaaatctgacacccttttattttacagttttggcgatatcattacccgcaaagaa
atgattcaaaaatctgaacttcccgatgaaatgaaggaggttcaattggccaagcttgaa
agaatgaaacaatacgctgaatctgaaatttgtagaaggcgtgtgctcatgagttacttc
aatgaagaaactaataacgattgcggaaattgtgatgtgtgccaaaaccctccacaaaga
ttcgatgcaaccatcttcgcacaaaaagcattatcggccattgcaagagcagaacaaaaa
gcggctatgggtatgttgattgatattcttcgaggttctcagaatcgttcaatttatgaa
aaaggatttcagaatttgaaaacctttggagtaggaaaagagctaaaatacgaagaatgg
gctgagtatattacacaaatgcttaactctggaatagttgatattgcctatgacgaacac
cattatttaaaactaaaccccgtttcatggcaagtattaaaaaatgaaagaaaagttgaa
ctagtaagatttgaaccttatgatgttaaaaaagcacgtttagatgaagatgtgcctaga
gaaagaacgaaaaaagatgtaataaaagatgctttgtttgagaaattaaggatacttaga
aagaaaattgctgaagagcaaaatattcctccctttgttgtattttctgatgctacgctt
tcagatatggcacaaaaaaggccaatcaatcgtttccaaatgatggccgtttctggcgtt
ggtgaacaaaaattcagaatgtatggagatgaatttatcaatgaaatattgagatttagt
ggtgaaaatccgaccatcgcacgtgctaagcaagagaaaggaatgacttttttggaaact
tttgaaatgtataagaatggtcttacacttgaagaaatggcagctaaacgttcactaaat
cccgtgacgattgtgagtcatttagtaaaactttttgaagatggccaagaggtagatttg
tggcaatacattatgaaatacgagtataatcaaatcattgccgaagccattaagatgaat
attcaaaaaggcgatgcaattaagccattatttgaagcactggagggtatttatgattat
gggaaactaagaatagccttagcgatttgggcaaaacaaaacgtataa
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