Emticicia oligotrophica: Emtol_3671
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Entry
Emtol_3671 CDS
T02272
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
eol
Emticicia oligotrophica
Pathway
eol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Emtol_3671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eol03021
]
Emtol_3671
03019 Messenger RNA biogenesis [BR:
eol03019
]
Emtol_3671
Transcription machinery [BR:
eol03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Emtol_3671
Messenger RNA biogenesis [BR:
eol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Emtol_3671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_25
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFK04797
UniProt:
A0ABN4AT70
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All DBs
Position
4026063..4027814
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AA seq
583 aa
AA seq
DB search
MYTLEELNLKLLSELRKICIEMGVKDVRTASKTELIQKVLEQQSSNSLFNIPKDPAVDQA
AVNNPEPPLFKEKEDKGGKTRKRLSKVEEKSTSENNTVQVVPPAVEVEHKTPHHKSNQNK
KNDFKKNFDKAPNIELESIVDEPQANIDEDPILSIPEPEEFDLAEIDAEMDEFARLTEDI
VPEITEPKEDKRYVDTYTKDIKKQYNNLIKEFDGIIENEGVLEIMQEGGYGFLRSADYNY
LASPDDIYVSPSQIKLFGLKTGDTVKGSIRPPKEGEKYFALLKVLSVNGKTTEEIRDRIP
FEYLTPLFPEEQIKLSGRPDVYSTRVLDLFAPIGKGQRGMIVAQPKTGKTVLLKEIANAI
TRNHPEVYLIILLIDERPEEVTDMQRSVRAEVIASTFDETADRHVKVSGVVLEKAKRLVE
CGHDVVILLDSITRLARAYNTVIPSSGKILSGGVDANALHKPKRFFGAARNVENGGSLTI
IATALIDTGSKMDEVIFEEFKGTGNMELQLDRKLANKRVYPAIDILASGTRREDLLMDKE
SLQKVWLLRKFMADMNPMETMEFLLDKMKGTRNNEEFLLTMNR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtacacattagaagaactgaatcttaaacttctatcagagttaagaaaaatttgtatt
gaaatgggtgttaaagatgtgagaactgcctcaaaaactgagttaatacagaaagtttta
gagcagcaaagctccaattcccttttcaatattccgaaagaccctgccgtagatcaggcc
gctgtgaataatccagaaccgccactttttaaagaaaaagaagataaaggtggtaaaaca
cgtaaaagactatcaaaagtagaagaaaaatctacttctgagaataatactgttcaggtt
gtccctcctgcagtggaagttgagcataaaacacctcatcacaaaagcaatcagaataag
aaaaacgattttaaaaagaattttgataaagctccaaatattgaattggaatcaatcgta
gatgagcctcaagccaatattgatgaagatccaattttatctatccctgaaccagaagag
tttgatttagcggaaattgatgcagagatggatgaatttgctcgtttgacagaagacatt
gttcctgaaattactgagccgaaagaagataaacgctacgtagatacttataccaaagat
attaagaagcagtacaataacctaatcaaagaatttgatggtataattgagaatgaaggg
gtattagaaattatgcaagaaggtggatacggcttcttacgttctgcagattataattac
cttgcaagtccagacgatatttatgtatcaccatctcaaattaaactgtttggtttaaaa
acgggtgataccgtaaaaggctcaattagaccaccaaaagaaggtgaaaaatacttcgca
ctcttaaaagtactgtcggtcaatggaaaaactactgaagaaattcgcgaccgtatcccg
tttgaatatcttactcctttatttccagaagaacaaatcaaattaagtggccgcccagac
gtatattctacgcgtgtactcgatttatttgccccgattggaaaaggacaacgtgggatg
attgtggcacagcccaaaacaggtaaaaccgtacttttgaaagaaattgccaatgcaatt
actcgcaatcaccctgaagtttatttgataattttactaattgatgaaagaccagaagag
gtaactgatatgcaaagaagtgttcgtgcagaggttattgcttctacttttgatgaaact
gccgaccgccatgtaaaagtatctggtgtggttttagagaaggcaaaacgtttggttgaa
tgtggacatgacgttgttattttgcttgactcaatcacacgcttggctcgtgcttacaat
acagttattccttcatcgggtaaaattctttcgggtggtgttgatgcgaatgcactccat
aaaccaaaacgtttctttggggccgctcgtaatgttgaaaatggcggttcgttgacaatt
attgctactgctttgattgatacaggttctaaaatggatgaggtaatttttgaagaattt
aaaggtacaggtaacatggagcttcaacttgaccgtaaattggccaataaacgtgtttat
cctgcaattgatattttggcttcgggtacacgccgagaagacttattgatggataaagaa
tctctacaaaaagtttggttattacgtaagtttatggccgatatgaacccaatggaaacc
atggagttcttgctagataaaatgaaaggaactcgaaataatgaagagtttttattgaca
atgaatagatag
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