Emticicia oligotrophica: Emtol_3726
Help
Entry
Emtol_3726 CDS
T02272
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eol
Emticicia oligotrophica
Pathway
eol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Emtol_3726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eol03019
]
Emtol_3726
Enzymes [BR:
eol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Emtol_3726
Messenger RNA biogenesis [BR:
eol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Emtol_3726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
P-loop_SecA
AAA_19
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AFK04852
LinkDB
All DBs
Position
complement(4084479..4085786)
Genome browser
AA seq
435 aa
AA seq
DB search
MLFESLNLIEPIRLALAAEGYTTPTPIQQQAIPIVLAGKDLIGVAQTGTGKTAAFSIPII
QQLYQKVDTNRKGKRKIKALIVTPTRELAIQIGESLAAYGANTDLKYSVIFGGVKQGKQT
EELQQGVDILVATPGRLLDLIGQGIINLSSIEIFVLDEADRMLDMGFVHDVKRLIKLLPT
KRQSLFFSATMPDEIVKLSATILNNPSSVSVTPVSSTADTIKQFLYHVDKKDKNALLLEI
LKDSNIETVLVFTRTKHGADKVVKMLSGKNIKAEAIHGNKAQNARQRALNNFKSKETRVL
VATDIAARGIDVDDLAYVINYEIPNIPETYVHRIGRTGRAGSNGIAFSFCENEELTYLKD
IQRLIGKKIPVIEEHPYAVKPNYGVVAPPQNNNRNKESRQNSNRPKQSNTSKPNPNASTE
GSSKSKKKWYGGSRK
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgttatttgaatcattgaatttaattgagcccattaggctcgcacttgctgcagaaggt
tacacaactccaactcccatccaacaacaagccattccgatagtattagcagggaaagac
ctcattggggtagcccaaacgggtactggtaaaacagctgctttttcaataccaatcata
caacaattatatcaaaaagttgacaccaatcgaaaaggcaaaagaaagattaaagcctta
atcgttacaccaacacgtgaattagcaattcaaattggtgaaagtttagcagcttatggt
gctaataccgatttaaaatactctgtaatatttggaggggttaaacaaggcaaacaaaca
gaagaattgcaacaaggcgttgatatattagtagcaacacctggccgacttctcgattta
ataggtcaaggaattatcaatttatcttcaatcgaaatttttgttttagatgaagctgac
cgaatgttagatatgggttttgttcatgatgtaaaacgcttaataaaacttttacctact
aaacgtcaatcactttttttctcggcaacgatgcccgacgaaattgttaagctctcggct
actattctaaacaatccatcttctgtaagtgtaactccagtttcttcaaccgcagataca
attaaacaatttttgtatcatgtagataaaaaagataaaaatgcactgcttttagaaatc
ttaaaggattctaatattgaaacagtattggtttttacaagaactaaacacggtgctgat
aaagttgtaaaaatgctttcaggaaagaacatcaaagcagaagccattcatggaaataaa
gctcaaaatgctcgtcaaagagctttaaataatttcaaatcaaaagaaacaagggtttta
gttgctaccgatatagcagcccgaggaatcgatgtggatgatttggcttacgtaatcaat
tacgaaatacctaacattcctgaaacctacgtacatagaatcggtagaacggggcgtgct
ggtagcaatggcattgcattttctttttgtgaaaatgaagaacttacttatctgaaagat
attcaaagattaattggcaagaaaataccagttattgaagagcatccttatgcagtaaaa
cctaattatggagttgtagcaccacctcagaacaataatcgaaataaagaatcacgacaa
aatagcaataggccgaaacaatcaaatacttcaaagccaaacccaaatgcttcaacggaa
ggttcttcaaaatctaaaaagaaatggtacggcggctcaagaaaataa
DBGET
integrated database retrieval system
