Emticicia oligotrophica: Emtol_3826
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Entry
Emtol_3826 CDS
T02272
Name
(GenBank) 2,3 cyclic-nucleotide 2-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
eol
Emticicia oligotrophica
Pathway
eol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Emtol_3826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eol03019
]
Emtol_3826
Messenger RNA biogenesis [BR:
eol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Emtol_3826
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF4954
Motif
Other DBs
NCBI-ProteinID:
AFK04952
LinkDB
All DBs
Position
complement(4201878..4203464)
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AA seq
528 aa
AA seq
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MSDIIMMLLTDLIALAIGFFVGRALLKKTFQTKEAEAEIRANEVLKNAQQTAENIKKDKM
LEAKEHFLKLKSEFEEESNKRKNIILQNEQRVKQMQQQASQMVEQNKRRENELEALQNKL
NEQTEQAVKQTELAAKRKEEAEKMLSQQVAQLEKIANLTAEQAKQQLIDAIKGEAETRAS
GFIKQTIEEAKLTATKESKKIIIETIQRTAAEQAIENCVSVFNIEGDEIKGKVIGREGRN
IRALEAATGVEVIVDDTPEAIVISSFDPVRREIARLSLHRLVQDGRIHPARIEEVVAKTK
KDIENEINEIGERTVIDLGVHGLHPELIRMIGRMRFRSSYGQNLLQHSREVAKMCATMAS
ELGLNAKLAKRAGLLHDIGKVWHEEQELPHALLGMELAKKYKEHPEVINAIGAHHDEIEM
TSMISPIVQICDSISGSRPGARREMMESYVQRLRDLEALALSYNGVEKCYAIQAGRELRV
IVDSENVTDEIASKLSFDISQRIEKEMQYPGQIKVTVIREMRSVAYAK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatattataatgatgctccttactgacctaattgcgttggcaattggttttttt
gtgggtagagcattactcaaaaaaacattccaaactaaagaagcagaagcagaaataaga
gccaatgaagtattaaaaaatgcccaacaaaccgccgaaaacattaaaaaagataaaatg
ttagaggccaaagagcattttttaaagctaaaatcggaatttgaagaagagtctaataaa
cgtaaaaatattattcttcaaaatgagcaacgtgtgaagcaaatgcaacaacaagcttca
caaatggttgaacaaaataaacgtcgtgaaaatgaattagaagctttgcaaaacaagctt
aacgaacaaactgaacaagcagttaaacaaactgaacttgccgcaaaacgtaaagaagaa
gcagagaaaatgcttagccagcaagtagcacagttagaaaaaattgctaatttgaccgct
gaacaagcaaaacaacaattaattgatgctattaaaggtgaagctgaaacacgagcatct
ggctttattaaacaaacgattgaagaagcaaaactaactgctacgaaagaatctaagaaa
attatcattgaaacgattcaacgtactgctgctgaacaagctatcgaaaactgcgtttct
gtatttaatatcgagggcgatgaaattaaaggtaaagttattggtagagaaggtcgtaac
attcgtgcccttgaagcagccacaggtgttgaagtaattgttgatgatactccagaagca
attgtgatttcaagttttgaccctgttcgccgtgaaattgcacgcttatctctgcatcgt
ttggtgcaagatggacgcatacaccctgctcgaattgaagaagtagtagcgaaaaccaaa
aaggatatcgaaaacgaaatcaacgaaattggtgagcgtacggtaattgatttaggtgta
cacggtttacatccagaattaattcgtatgattggccgtatgcgtttccgctcatcttac
ggacaaaacctcctacaacactcaagagaagttgccaaaatgtgtgctacgatggcatct
gaattaggtttgaatgcaaaactagccaaacgtgcaggtttactccacgatattggtaag
gtttggcacgaagagcaggaattacctcacgctcttttaggtatggaactagctaagaaa
tataaagaacatccagaagttattaatgcgattggagctcaccacgatgaaattgaaatg
acctcaatgatttctccaattgttcaaatctgtgactctatttctggttctcgtcctggt
gcacgccgagaaatgatggaatcttatgttcaacgccttcgtgaccttgaagcactcgct
ctaagttataatggcgtagaaaaatgctatgctattcaggcgggtcgtgaactacgtgta
attgtagattcagaaaatgttactgatgaaatagcaagtaaattatcgtttgatatttct
caaagaattgaaaaagaaatgcaatatcctggccaaatcaaagtaacggttattcgtgaa
atgagaagcgtggcttatgcaaaataa
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